Evidence map›Paper›PMID 41393220›Full record

ArticleInternational Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium)2026

KeBaB:

Nathaniel K Brown, Lore Depuydt, Mohsen Zakeri, Anas Alhadi, Nour Allam, Dove Begleiter, Nithin Bharathi Kabilan Karpagavalli, Suchith Sridhar Khajjayam, Hamza Wahed, Travis Gagie and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Nathaniel K BrownJohns Hopkins University, Baltimore, USA.ORCID 0000-0002-6201-2301
Lore DepuydtGhent University, Ghent, Belgium.ORCID 0000-0001-8517-0479
Mohsen ZakeriJohns Hopkins University, Baltimore, USA.ORCID 0000-0002-9856-719X
Anas AlhadiDalhousie University, Halifax, Canada.
Nour AllamDalhousie University, Halifax, Canada.
Dove BegleiterDalhousie University, Halifax, Canada.
Nithin Bharathi Kabilan KarpagavalliDalhousie University, Halifax, Canada.
Suchith Sridhar KhajjayamDalhousie University, Halifax, Canada.
Hamza WahedDalhousie University, Halifax, Canada.
Travis GagieDalhousie University, Halifax, Canada.ORCID 0000-0002-1825-0097
Ben LangmeadJohns Hopkins University, Baltimore, USA.ORCID 0000-0003-2437-1976

Funding

Personal and panel references for improved alignmentR01HG011392 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI LANGMEAD, BENJAMIN THOMAS · 2020 to 2025
$4.2M
Fully Realizing Pangenomics AlignmentR56HG013865 · NHGRI · UNIVERSITY OF FLORIDA · PI BOUCHER, CHRISTINA, LANGMEAD, BENJAMIN THOMAS · 2024 to 2024
$645k
NHGRI NIH HHS R01 HG011392NHGRI NIH HHS R56 HG013865
6 · The paper itself

Abstract

Long maximal exact matches (MEMs) are used in many genomics applications such as read classification and sequence alignment. Li's ropebwt3 finds long MEMs quickly because it can often ignore much of its input, skipping matching steps which are redundant to the final output. In this paper we propose KeBaB, a fast and space efficient

Indexed as

k-mer filtrationMaximal exact matchesPseudo-MEMs

Identifiers

PMID41393220
PMCPMC12700359

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.