Evidence map›Paper›PMID 41392311›Full record

ArticleMicrobial cell factories2025

Application of spectroscopic methods for direct characterization of photosynthetic pigments and inert intracellular components in the model purple non sulfur bacterium Rhodospirillum rubrum.

Eva Slaninova, Viktorie-Alexandra Pacasova, Ota Samek, Hugo Fleuriot-Blitman, Manfred Zinn, Martin Koller, Marketa Benesova, Stanislav Obruca, Petr Sedlacek

Abstract read
In one paragraph

Article in Microbial cell factories, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Eva SlaninovaFaculty of Chemistry, Brno University of Technology, Purkynova 464/118, 612 00, Brno, Czech Republic.
Viktorie-Alexandra PacasovaFaculty of Chemistry, Brno University of Technology, Purkynova 464/118, 612 00, Brno, Czech Republic.
Ota SamekInstitute of Scientific Instruments, v.v.i., Czech Academy of Sciences, Kralovopolska 147, 612 64, Brno, Czech Republic.
Hugo Fleuriot-BlitmanInstitute of Life Sciences, University of Applied Sciences and Arts Western Switzerland Valais-Wallis (HES-SO Valais-Wallis), Sion, Switzerland.
Manfred ZinnInstitute of Life Sciences, University of Applied Sciences and Arts Western Switzerland Valais-Wallis (HES-SO Valais-Wallis), Sion, Switzerland.
Martin KollerInstitute of Chemistry, NAWI Graz, University of Graz, Heinrichstrasse 28/IV, 8010, Graz, Austria.
Marketa BenesovaFaculty of Chemistry, Brno University of Technology, Purkynova 464/118, 612 00, Brno, Czech Republic.
Stanislav ObrucaFaculty of Chemistry, Brno University of Technology, Purkynova 464/118, 612 00, Brno, Czech Republic.
Petr SedlacekFaculty of Chemistry, Brno University of Technology, Purkynova 464/118, 612 00, Brno, Czech Republic. sedlacek-p@fch.vut.cz.

Funding

Grantová Agentura České Republiky GACR 21-15958LSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung SNSF 205321L_197275/1
6 · The paper itself

Abstract

backgroundNon-invasive spectroscopic methods are increasingly valued in life sciences, where preserving the native state of biomolecules is essential for accurate interpretation. Traditional analyses of microbial compounds typically involve solvent-based extraction and chromatographic separation processes, which are time consuming, damaging to samples, and can alter biomolecular structures of complexes. To overcome these limitations, we developed a novel spectroscopic workflow for direct metabolite monitoring in microbial cells.

resultsIn this study, we established a combined spectroscopic methodology that allows direct pigment and polyhydroxyalkanoates (PHAs) analysis in complex biological samples without requiring chemical extraction procedures. The UV-Vis spectroscopy technique using an integrating sphere enables direct monitoring of pigments even in turbid whole cell suspensions, providing detailed fingerprints of bacteriochlorophyll a and carotenoids in their natural environment. Together, these techniques provide consistent information about cellular composition. Using the photosynthetic bacterium Rhodospirillum rubrum as a model organism, we demonstrate that our combined spectroscopic approach can resolve pigment states, reveal intracellular PHA content and crystallinity, and measure carotenoids and bacteriochlorophylls directly in native whole cell suspensions. Furthermore, advanced data processing provided an improved interpretation of pigment and PHA states in different cellular forms.

conclusionsThis innovative combination of spectroscopic techniques reduces sample manipulation, preserves cellular integrity and provides rapid, precise, and environmentally friendly analysis of microbial metabolites in their natural physiological conditions. The demonstrated workflow is broadly applicable to biological samples where maintaining biomolecular integrity is crucial, and it has strong potential for applications in process analytical technology and industrial biotechnology.

Indexed as

Pigments, BiologicalRhodospirillum rubrumBacteriochlorophyll ABacteriochlorophyllsCarotenoidsPhotosynthesisPolyhydroxyalkanoatesSpectrum AnalysisBacteriochlorophyll ABacteriochlorophyllsCarotenoidsPigments, BiologicalPolyhydroxyalkanoatesBacteriochlorophyll aCarotenoidsPhotosynthetic pigmentsPolyhydroxyalkanoatesRhodospirillum rubrumUV-Vis spectroscopyVibrational spectroscopy

Identifiers

PMID41392311
PMCPMC12723893

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.