Evidence map›Paper›PMID 41390511›Full record

ArticleNature communications2025

Structure of the 30S translation initiation complex coupled to paused RNA polymerase and its potential for riboregulation.

Johann J Roske, Giulia Paris, Akanksha Goyal, Marina Rodnina, Nikolay Zenkin, Katarzyna J Bandyra, Ben F Luisi

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. What makes a small RNA work?Nucleic acids research · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Johann J RoskeDepartment of Biochemistry, Sanger Building, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0001-8500-901X
Giulia ParisDepartment of Biochemistry, Sanger Building, University of Cambridge, Cambridge, UK.
Akanksha GoyalMax Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.
Marina RodninaMax Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.ORCID http://orcid.org/0000-0003-0105-3879
Nikolay ZenkinCentre for Bacterial Cell Biology, Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle Upon Tyne, UK.ORCID http://orcid.org/0000-0003-2212-9545
Katarzyna J BandyraDepartment of Biochemistry, Sanger Building, University of Cambridge, Cambridge, UK. k.bandyra@uw.edu.pl.ORCID http://orcid.org/0000-0003-2607-6700
Ben F LuisiDepartment of Biochemistry, Sanger Building, University of Cambridge, Cambridge, UK. bfl20@cam.ac.uk.ORCID http://orcid.org/0000-0003-1144-9877

Funding

Wellcome Trust
6 · The paper itself

Abstract

In many bacterial species, transcription and translation can be coupled physically, with potential impact on the rates and efficiency of gene expression. Here, we present structural evidence from cryo-EM demonstrating that a bacterial RNA polymerase that is paused proximally to the promoter can associate with the pioneering 30S translation initiation complex (30S IC). These findings suggest that the physical link between transcription and translation can be established prior to commitment to protein synthesis. Although the mRNA is embedded in this 'early expressome' complex, it can nonetheless interact with small regulatory RNA (sRNA) and be targeted for cleavage in the protein-coding region by the RNA degradosome assembly in vitro. The potential tagging of transcripts with sRNA during pioneering and subsequent stages of translation initiation, when the 30S IC is at the 5' end of a polyribosome, may in principle contribute to efficient and rapid termination of gene expression in response to regulatory signals.

Indexed as

DNA-Directed RNA PolymerasesPeptide Chain Initiation, TranslationalRibosome Subunits, Small, BacterialCryoelectron MicroscopyEndoribonucleasesEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialMultienzyme ComplexesPolyribonucleotide NucleotidyltransferasePromoter Regions, GeneticProtein BiosynthesisRNA, BacterialRNA HelicasesRNA, MessengerRNA, Small UntranslateddegradosomeDNA-Directed RNA PolymerasesEndoribonucleasesEscherichia coli ProteinsMultienzyme ComplexesPolyribonucleotide NucleotidyltransferaseRNA, BacterialRNA HelicasesRNA, MessengerRNA, Small Untranslated

Identifiers

PMID41390511
PMCPMC12820379

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.