Evidence map›Paper›PMID 41387953›Full record

ArticleNature communications2025

Knowledge-guided adaptation of pathology foundation models effectively improves cross-domain generalization and demographic fairness.

Yanyan Huang, Weiqin Zhao, Zhengyu Zhang, Yihang Chen, Yu Fu, Feng Wu, Yuming Jiang, Li Liang, Shujun Wang, Lequan Yu

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yanyan HuangSchool of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0009-0001-6071-3905
Weiqin ZhaoSchool of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0009-0004-7065-2220
Zhengyu ZhangDepartment of Pathology, Nanfang Hospital, School of Basic Medical Sciences, Southern Medical University, Guangzhou, China.
Yihang ChenSchool of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0009-0003-0957-2064
Yu FuSchool of Information Science and Engineering, Lanzhou University, Lanzhou, Gansu, China.
Feng WuSchool of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0009-0009-1454-001X
Yuming JiangSchool of Medicine, Wake Forest University, Winston-Salem, North Carolina, USA.ORCID http://orcid.org/0000-0001-6184-3931
Li LiangDepartment of Pathology, Nanfang Hospital, School of Basic Medical Sciences, Southern Medical University, Guangzhou, China. lli@smu.edu.cn.ORCID http://orcid.org/0000-0001-5302-2754
Shujun WangDepartment of Biomedical Engineering, The Hong Kong Polytechnic University, Hong Kong SAR, China. shu-jun.wang@polyu.edu.hk.ORCID http://orcid.org/0000-0003-1495-3278
Lequan YuSchool of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China. lqyu@hku.hk.ORCID http://orcid.org/0000-0002-9315-6527

Funding

Innovation and Technology Fund (ITF) ITS/274/22, GHP/318/22GDResearch Grants Council, University Grants Committee (RGC, UGC) 27206123, 17200125, C5055-24G, T45-401/22-NResearch Grants Council, University Grants Committee (RGC, UGC) C5055-24G
6 · The paper itself

Abstract

Foundation models in computational pathology suffer from site-specific and demographic biases, which compromise their generalizability and fairness. We introduce FLEX, a framework that employs a task-specific information bottleneck, guided by visual and textual domain knowledge, to disentangle robust pathological features from these artifacts. Using three large cohorts (The Cancer Genome Atlas, Clinical Proteomic Tumor Analysis Consortium, and an in-house dataset) across 16 clinical tasks, totaling over 9,900 slides, we demonstrate that FLEX achieves superior zero-shot generalization to unseen external cohorts, significantly outperforming baselines and narrowing the performance gap between seen and unseen domains. A comprehensive fairness analysis confirms that FLEX also effectively mitigates disparities across demographic groups. Furthermore, its versatility and scalability are proven through compatibility with various foundation models and multiple-instance learning architectures. Our work establishes FLEX as a promising solution for developing more generalizable and equitable pathology AI for diverse clinical settings.

Indexed as

Computational BiologyNeoplasmsHumans

Identifiers

PMID41387953
PMCPMC12749728

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.