Evidence map›Paper›PMID 41387735›Full record

ArticleScientific data2025

Chromosome-level genome assembly and annotation of the kuruma shrimp Marsupenaeus japonicus.

Yiming Wei, Hao Xu, Zhixiong Zhou, Panpan Wang, Wenzhi Cheng, Huiyang Huang, Shaoxiong Ding, Yong Mao

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yiming Wei *State Key Laboratory of Marine Environmental Science; State Key Laboratory of Mariculture Breeding; Fujian Key Laboratory of Genetics and Breeding of Marine Organisms; College of Ocean and Earth Sciences, Xiamen University, Xiamen, 361102, China.
Hao Xu *State Key Laboratory of Marine Environmental Science; State Key Laboratory of Mariculture Breeding; Fujian Key Laboratory of Genetics and Breeding of Marine Organisms; College of Ocean and Earth Sciences, Xiamen University, Xiamen, 361102, China.
Zhixiong ZhouFisheries College, Tianjin Agricultural University, Tianjin, 300384, China.
Panpan WangJiangsu Key Laboratory of Marine Bioresources and Environment, Jiangsu Ocean University, Lianyungang, 222005, China.
Wenzhi ChengMarine Science Research Institute of Shandong Province (National Oceanographic Center, Qingdao), Qingdao, 266104, China.
Huiyang HuangState Key Laboratory of Marine Environmental Science; State Key Laboratory of Mariculture Breeding; Fujian Key Laboratory of Genetics and Breeding of Marine Organisms; College of Ocean and Earth Sciences, Xiamen University, Xiamen, 361102, China.
Shaoxiong DingState Key Laboratory of Marine Environmental Science; State Key Laboratory of Mariculture Breeding; Fujian Key Laboratory of Genetics and Breeding of Marine Organisms; College of Ocean and Earth Sciences, Xiamen University, Xiamen, 361102, China. sxding@xmu.edu.cn.
Yong MaoState Key Laboratory of Marine Environmental Science; State Key Laboratory of Mariculture Breeding; Fujian Key Laboratory of Genetics and Breeding of Marine Organisms; College of Ocean and Earth Sciences, Xiamen University, Xiamen, 361102, China. maoyong@xmu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The kuruma shrimp Marsupenaeus japonicus is one of the most economically important shrimp species in the world. Here, we constructed a chromosome-level genome assembly of M. japonicus by combining PacBio long reads, Illumina short reads and Hi-C scaffolding. The genome size was 1.64 Gb with a scaffold N50 length of 40.61 Mb, and 97.83% (1.60 Gb) of the assembled sequences were anchored to 43 chromosomes. The genome contained 62.79% repeat sequences and 21,172 protein-coding genes, of which 83.20% were functionally annotated. The completeness of M. japonicus genome assembly is highlighted by a BUSCO score of 91.0%. Evolutionary analysis indicated that M. japonicus was closely related to Litopenaeus vannamei and Penaeus monodon, with an estimated divergence time from their common ancestor of 88.33 million years ago. In sum, the chromosome-level genome assembly and annotation provide fundamental resources for genetic breeding and molecular mechanism related studies of M. japonicus.

Indexed as

ChromosomesGenomePenaeidaeAnimalsEvolution, MolecularMolecular Sequence Annotation

Identifiers

PMID41387735
PMCPMC12748559

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.