Evidence map›Paper›PMID 41387429›Full record

ArticleNature communications2025

Tissue-specific mutagenesis from endogenous guanine damage is suppressed by Polκ and DNA repair.

Yang Jiang, Moritz Przybilla, Linda Bakker, Foster C Jacobs, Dylan Mckeon, Roxanne van der Sluijs, Koichi Sato, Juliëtte Wezenbeek, Joeri van Strien, Jeroen Willems and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Yang JiangHubrecht Institute - KNAW and University Medical Center Utrecht, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0002-9078-3453
Moritz PrzybillaWellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0001-5645-9492
Linda BakkerHubrecht Institute - KNAW and University Medical Center Utrecht, Utrecht, The Netherlands.
Foster C JacobsMasonic Cancer Center, University of Minnesota, Minneapolis, MN, USA.
Dylan MckeonMasonic Cancer Center, University of Minnesota, Minneapolis, MN, USA.
Roxanne van der SluijsHubrecht Institute - KNAW and University Medical Center Utrecht, Utrecht, The Netherlands.ORCID http://orcid.org/0009-0005-2942-8144
Koichi SatoHubrecht Institute - KNAW and University Medical Center Utrecht, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0002-0574-774X
Juliëtte WezenbeekHubrecht Institute - KNAW and University Medical Center Utrecht, Utrecht, The Netherlands.
Joeri van StrienHubrecht Institute - KNAW and University Medical Center Utrecht, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0003-4285-4429
Jeroen WillemsHubrecht Institute - KNAW and University Medical Center Utrecht, Utrecht, The Netherlands.
Alexander E E VerkennisHubrecht Institute - KNAW and University Medical Center Utrecht, Utrecht, The Netherlands.
Jamie BarnettHubrecht Institute - KNAW and University Medical Center Utrecht, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0003-0731-7249
Adrian Baez OrtegaWellcome Sanger Institute, Hinxton, UK.
Federico AbascalWellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0002-6201-1587
Peter W VillaltaMasonic Cancer Center, University of Minnesota, Minneapolis, MN, USA.ORCID http://orcid.org/0000-0002-0067-3083
Puck KnipscheerHubrecht Institute - KNAW and University Medical Center Utrecht, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0003-4198-0132
Inigo MartincorenaWellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0003-1122-4416
Silvia BalboMasonic Cancer Center, University of Minnesota, Minneapolis, MN, USA.
Juan GaraycoecheaHubrecht Institute - KNAW and University Medical Center Utrecht, Utrecht, The Netherlands. juan.g@hubrecht.eu.ORCID http://orcid.org/0000-0001-5626-808X

Funding

Women's CancerP30CA077598 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Timothy C. Hallstrom · 1998 to 2026
$100.4M
Kidney DNA AdductomicsR01ES030765 · NIEHS · UNIVERSITY OF MINNESOTA · PI BALBO, SILVIA, TURESKY, ROBERT J. · 2020 to 2024
$2.2M
Mass Spectrometric Analytical Collaborations with Members of the Masonic Cancer Center of the University of MinnesotaR50CA211256 · NCI · UNIVERSITY OF MINNESOTA · PI Peter William Villalta · 2016 to 2026
$2.1M
NCI NIH HHS P30 CA077598NCI NIH HHS R50 CA211256NIEHS NIH HHS R01 ES030765
6 · The paper itself

Abstract

Knowledge of mutational patterns has expanded significantly, but linking these patterns to specific molecular mechanisms or sources of endogenous DNA damage remains challenging. Translesion synthesis (TLS) is a key determinant of mutagenesis, yet the endogenous lesions that require TLS and how TLS polymerases shape mammalian mutational landscapes are unclear. Here, we characterize somatic mutational patterns across mouse tissues deficient in the TLS polymerase Polκ and find that Polκ suppresses a distinct tissue-specific mutational signature in the liver and kidney. This signature, enriched for C > A/G/T mutations with strong transcriptional-strand bias, indicates that Polκ performs error-free bypass of endogenous guanine adducts. Nucleotide excision repair (NER) acts in parallel, mitigating some of this damage. Targeted adductomics and biochemical analyses identify endogenous N

Indexed as

DNA DamageDNA-Directed DNA PolymeraseDNA RepairGuanineMutagenesisAnimalsDNA AdductsKidneyLiverMiceMice, Inbred C57BLMice, KnockoutMutationOrgan SpecificityY-Family DNA PolymerasesDNA AdductsDNA-Directed DNA PolymeraseGuaninePolk protein, mouseY-Family DNA Polymerases

Identifiers

PMID41387429
PMCPMC12800090

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.