Evidence map›Paper›PMID 41385633›Full record

ArticleScience advances2025

Integrated single-cell atlases unveil the operation principles of whole-brain 5-HT neuronal subsystems.

Ziqi Song, Chun-Xiao Huang, Huixian Zhang, Chuanzhe Ye, Na Guan, Jianren Song

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ziqi SongShanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai 200434, China.ORCID 0009-0005-0837-7771
Chun-Xiao HuangShanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai 200434, China.ORCID 0000-0002-9169-6191
Huixian ZhangShanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai 200434, China.
Chuanzhe YeShanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai 200434, China.
Na GuanShanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai 200434, China.ORCID 0000-0002-8879-6765
Jianren SongShanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai 200434, China.ORCID 0000-0001-6949-7455

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Investigating 5-hydroxytryptamine (5-HT) neuronal subsystems and the operation principles is crucial for elucidating their complex roles in the regulation of various physiological and behavioral outcomes. Until now, these efforts faced methodological and analytical hurdles. Here, we developed resource datasets in zebrafish that include a single-cell projectomic dataset, two independent scRNA-seq datasets, and a whole-brain 5-HT neuron functional imaging database at cellular resolution. The integrated analysis uncovered seven 5-HT subpopulations, each with unique axon projection patterns, specific soma locations, and distinctive genetic profiles. Within each subsystem, 5-HT neurons were functionally homogeneous, whereas across different subsystems, they were functionally heterogeneous. We further demonstrate that each 5-HT subsystem functions as a distinct module playing a role in multiple tasks, rather than being exclusive to one function. Moreover, the involvement of multiple parallel 5-HT subsystems, rather than a single subsystem, is fundamental to the accomplishment of a specific task. These results provide insights into the operation of 5-HT neuronal system in mammals.

Indexed as

BrainNeuronsSerotonergic NeuronsSerotoninSingle-Cell AnalysisAnimalsZebrafishSerotonin

Identifiers

PMID41385633
PMCPMC12700189

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.