Evidence map›Paper›PMID 41385520›Full record

ArticlePLoS biology2025

Identification of sporulation genes in Bacillus anthracis highlights similarities and significant differences with Bacillus subtilis.

Fernando H Ramírez-Guadiana, Anna P Brogan, Yuanchen Yu, Caroline Midonet, Joel W Sher, Ernst W Schmid, Ian J Roney, David Z Rudner

Abstract readComparative Study
In one paragraph

Article in PLoS biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. A broadly conserved gram-positive lipoprotein regulates cell elongation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Fernando H Ramírez-GuadianaDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts, United States of America.
Anna P BroganDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts, United States of America.
Yuanchen YuDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts, United States of America.
Caroline MidonetDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts, United States of America.
Joel W SherDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts, United States of America.
Ernst W SchmidDepartment of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts, United States of America.
Ian J RoneyDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts, United States of America.
David Z RudnerDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0002-0236-7143

Funding

Identification and characterization of a comprehensive set of factors required for sporulation and germination in Bacillus anthracisR21AI171308 · NIAID · HARVARD MEDICAL SCHOOL · PI RUDNER, DAVID Z · 2022 to 2023
$466k
NIAID NIH HHS R21 AI171308
6 · The paper itself

Abstract

The molecular basis of endospore formation in the model gram-positive bacterium Bacillus subtilis has been investigated for over half a century. Here, using high throughput and classical genetic approaches, we performed a comparative analysis of sporulation in the human pathogen Bacillus anthracis. A transposon-sequencing screen identified >150 genes required for B. anthracis sporulation. As anticipated, many of the genes that are critical for sporulation in B. subtilis were also required for B. anthracis sporulation. However, we identified >50 genes that are important for sporulation in B. anthracis but not in B. subtilis, and 22 B. anthracis sporulation genes that are absent from the B. subtilis genome. To validate the hits from our screen, we generated an ordered transposon-mutant library using Knockout Sudoku. Cytological analysis of a subset of the canonical sporulation-defective mutants revealed similar but not identical phenotypes in the pathogen compared to the model. We investigated several of the newly identified sporulation genes, with an in-depth analysis of one, ORF 04167, renamed ipdA. Sporulating cells lacking ipdA are blocked in the morphological process of engulfment, generating septal bulges. An AlphaFold-Multimer screen and a classical genetic enrichment revealed that IpdA is a secreted inhibitor of the polysaccharide deacetylase PdaN. Our data support a model in which induction of IpdA at the onset of sporulation inhibits deacetylation of the cell wall peptidoglycan (PG), enabling the sporulation-specific PG hydrolases to catalyze engulfment. Altogether, our studies reveal that B. subtilis is an excellent model for endospore formation in B. anthracis, while underscoring the importance of direct analysis in B. anthracis. The suite of tools that we have generated will catalyze the molecular dissection of sporulation and other cell biological processes in this important human pathogen.

Indexed as

Bacillus anthracisBacillus subtilisGenes, BacterialSpores, BacterialBacterial ProteinsDNA Transposable ElementsGene Expression Regulation, BacterialMutationBacterial ProteinsDNA Transposable Elements

Identifiers

PMID41385520
PMCPMC12700454

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.