Evidence map›Paper›PMID 41385327›Full record

ArticleNucleic acids research2025

Phosphorylation of HP1/Swi6 relieves competition with Suv39/Clr4 on nucleosomes and enables H3K9 trimethyl spreading.

Dana R Kennedy, Joël Lemière, Ahmed A A Amine, Eric W Martin, Catherine Tan, Eric Simental, Julian Braxton, Robert A Maxwell, Bassem Al-Sady

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Dana R KennedyDepartment of Microbiology and Immunology and GW Hooper Foundation, UCSF,  CA 94143, United States.
Joël LemièreDepartment of Cell and Tissue Biology, UCSF,  CA 94158, United States.
Ahmed A A AmineDepartment of Microbiology and Immunology and GW Hooper Foundation, UCSF,  CA 94143, United States.
Eric W MartinDepartment of Microbiology and Immunology and GW Hooper Foundation, UCSF,  CA 94143, United States.
Catherine TanDepartment of Cell and Tissue Biology, UCSF,  CA 94158, United States.
Eric SimentalDepartment of Microbiology and Immunology and GW Hooper Foundation, UCSF,  CA 94143, United States.
Julian BraxtonChemistry and Chemical Biology Graduate Program, UCSF,  CA 94143, United States.
Robert A MaxwellThe Vincent J. Coates Proteomics/Mass Spectrometry Core Laboratory, University of California, Berkeley, CA 94720, United States.
Bassem Al-SadyDepartment of Microbiology and Immunology and GW Hooper Foundation, UCSF,  CA 94143, United States.ORCID 0000-0002-8996-7941

Funding

Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VAISSE, CHRISTIAN · 2003 to 2019
$21.8M
UCSF IRACDA Scholars ProgramK12GM081266 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Raymond M. Esquerra, HOLLY A. INGRAHAM · 2007 to 2026
$19.4M
MOLECULAR AND CELLULAR BASIS OF CARDIOVASCULAR DISEASET32HL007731 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Brian L Black · 1992 to 2026
$12.4M
Reconstructing dynamic epigenetic genome partitioning in single stem cellsDP2GM123484 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AL-SADY, BASSEM · 2016 to 2020
$2.5M
Tracking how molecular machines propagate epigenetic information in time and spaceR35GM141888 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AL-SADY, BASSEM · 2021 to 2025
$2.3M
DRC NIH P30 DK063720Ford FoundationNational Science Foundation 2034836National Science Foundation 2113319NHLBI NIH HHS T32 HL007731NIDDK NIH HHS P30 DK063720NIGMS NIH HHS DP2 GM123484NIGMS NIH HHS K12 GM081266NIGMS NIH HHS R35 GM141888NIH HHS 5K12GM081266-17NIH HHS 5T32HL007731-32NIH HHS DP2GM123484-01S1NIH HHS R35 GM141888
6 · The paper itself

Abstract

Heterochromatin formation in Schizosaccharomyces pombe requires the spreading of histone 3 (H3) Lysine 9 (K9) methylation (me) from nucleation centers by the H3K9 methylase, Suv39/Clr4, and the reader protein, HP1/Swi6. To accomplish this, Suv39/Clr4 and HP1/Swi6 have to associate with nucleosomes both nonspecifically, binding DNA, and octamer surfaces and specifically, via recognition of methylated H3K9 by their respective chromodomains. However, how both proteins avoid competition for the same nucleosomes in this process is unclear. Here, we show that phosphorylation tunes oligomerization and the nucleosome affinity of HP1/Swi6 such that it preferentially partitions onto Suv39/Clr4's trimethyl product rather than its unmethylated substrates. Preferential partitioning enables efficient conversion from di-to trimethylation on nucleosomes in vitro and H3K9me3 spreading in vivo. Together, our data suggest that phosphorylation of HP1/Swi6 creates a regime that increases oligomerization and relieves competition with the "read-write" mechanism of Suv39/Clr4, together promoting for productive heterochromatin spreading.

Indexed as

Cell Cycle ProteinsChromosomal Proteins, Non-HistoneHistone-Lysine N-MethyltransferaseHistonesMethyltransferasesNucleosomesSchizosaccharomyces pombe ProteinsChromobox Protein Homolog 5HeterochromatinMethylationPhosphorylationSchizosaccharomycesCell Cycle ProteinsChromobox Protein Homolog 5Chromosomal Proteins, Non-Histoneclr4 protein, S pombeHeterochromatinHistone-Lysine N-MethyltransferaseHistonesMethyltransferasesNucleosomesSchizosaccharomyces pombe ProteinsSwi6 protein, S pombe

Identifiers

PMID41385327
PMCPMC12700098

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.