Evidence map›Paper›PMID 41385001›Full record

ArticlePlant cell reports2025

Root‑preferential OsPUB36 modulates ROS levels and regulates root development.

Sunok Moon, Yo-Han Yoo, Ha Eun Park, Hye Jo Min, Ye-Eun Han, Yun Shil Gho, Wonjae Hwang, Jun-Hyup Kim, Cheol Woo Min, Woo-Jong Hong and 3 more

Abstract read
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In one paragraph

Article in Plant cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

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0 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Sunok Moon *Graduate School of Green Bio-Science & Crop Biotech Institute, Kyung Hee University, Yongin, 17104, Republic of Korea.
Yo-Han Yoo *Upland Crop Breeding Division, Department of Upland Crop Sciences, National Institute of Crop and Food Science, RDA, Miryang, 50424, Republic of Korea.
Ha Eun ParkGraduate School of Green Bio-Science & Crop Biotech Institute, Kyung Hee University, Yongin, 17104, Republic of Korea.
Hye Jo MinDepartment of Systems Biology and Division of Life Science, Yonsei University, Seoul, 03722, Korea.
Ye-Eun HanGraduate School of Green Bio-Science & Crop Biotech Institute, Kyung Hee University, Yongin, 17104, Republic of Korea.
Yun Shil GhoGraduate School of Green Bio-Science & Crop Biotech Institute, Kyung Hee University, Yongin, 17104, Republic of Korea.
Wonjae HwangGraduate School of Green Bio-Science & Crop Biotech Institute, Kyung Hee University, Yongin, 17104, Republic of Korea.
Jun-Hyup KimGraduate School of Green Bio-Science & Crop Biotech Institute, Kyung Hee University, Yongin, 17104, Republic of Korea.
Cheol Woo MinDepartment of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea.
Woo-Jong HongDepartment of Smart Farm Science, Kyung Hee University, Yongin, 17104, Republic of Korea.
Woo Taek KimDepartment of Systems Biology and Division of Life Science, Yonsei University, Seoul, 03722, Korea.
Sun Tae KimDepartment of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea.
Ki-Hong JungGraduate School of Green Bio-Science & Crop Biotech Institute, Kyung Hee University, Yongin, 17104, Republic of Korea. khjung2010@khu.ac.kr.ORCID http://orcid.org/0000-0003-0427-5901

Funding

National Research Foundation of Korea RS-2020-NR048152National Research Foundation of Korea RS-2021-NR059380Rural Development Administration RS-2024-00322278
6 · The paper itself

Abstract

key messageOsPUB36, a root-preferential E3 ubiquitin ligase, modulates reactive oxygen species homeostasis and regulates rice root development, affecting primary root and root hair growth. Root development is tightly regulated by spatial gradients of reactive oxygen species (ROS), which coordinate transitions from cell division to elongation and differentiation. Through phylogenetic meta-analysis, we identified a root-preferential subclass of class III PUB E3 ubiquitin ligases (OsPUB31-OsPUB37). Among them, OsPUB36 was selected as a representative gene for functional characterization. Overexpressing OsPUB36, an endoplasmic reticulum (ER)-localized protein, resulted in shortened primary roots and elongated root hairs. RNA-seq and proteomic analysis of root hairs from plants overexpressing OsPUB36 revealed significant upregulation of class III peroxidases, key enzymes involved in ROS homeostasis. Histochemical staining confirmed enhanced levels of hydrogen peroxide (H₂O₂) in root hair. However, the loss-of-function mutants (ospub36 and ospub35 ospub36) displayed no obvious phenotypes, suggesting functional redundancy within these gene subclasses. While yeast two-hybrid screen did not identify direct targets related to ROS or root development, RNA-seq, proteomic, and histochemical analyses suggest that OsPUB36 and other class III PUBs modulate ROS homeostasis.

Indexed as

OryzaPlant ProteinsPlant RootsReactive Oxygen SpeciesUbiquitin-Protein LigasesGene Expression Regulation, PlantHydrogen PeroxidePhylogenyPlants, Genetically ModifiedHydrogen PeroxidePlant ProteinsReactive Oxygen SpeciesUbiquitin-Protein LigasesOsPUB36RootRoot hairsROS

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.