ArticleNature methods2026
Scikit-bio: a fundamental Python library for biological omic data analysis.
Abstract readLetter
In one paragraph
Article in Nature methods, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
19 citing papers in PubMed.
- 15-strain live biotherapeutic product or same donor fecal microbiota transplant for recurrent Clostridioides difficile infection: a randomized phase 1b trial.Nature medicine · 2026Trial
- Compositional and functional differences of gut microbiome and metabolome inform pathogenesis of cholestatic liver disease.Gut microbes · 2026Article
- Dual-Locus Metabarcoding Reveals Dry-Season Dietary Differentiation Between Elephants and Impalas in a South African Savanna.Ecology and evolution · 2026Article
- Cervicovaginal Virome Restructuring Associated with HPV Status, Bacterial Dysbiosis, and Cervical Cytological Abnormalities.Viruses · 2026Article
- Within a Heartbeat: A Machine Learning Approach Using VCG for Heart Failure Assessment in Sinus Rhythm.Journal of personalized medicine · 2026Article
- Iterative and data-driven ortholog mining enables reliable discovery of stereoselective ketoreductases.Nature communications · 2026Article
- Enteral Nutrition Is Associated with a Distinct Gut Microbiome Composition and Fermentation Capacity Profile After Acute Colonic Injury in Rats.International journal of molecular sciences · 2026Article
- Megascale microbiome analysis with DartUniFrac.Nature biotechnology · 2026Article
- Joint-RPCA: domain-aware multi-omics integration for systems microbiology.Molecular systems biology · 2026Article
- Diverse Microbial Communities Assemble on Both Recalcitrant and Labile Carbon Sources.Environmental microbiology · 2026Article
- The evolution of structural variation across 500 million years of vertebrate evolution.bioRxiv : the preprint server for biology · 2026Article
- Strain transmission links human microbiomes along the oral-gut axis and across cohabiting individuals.Cell press blue · 2026Article
- Fine-scale structure of a whole regional population through genetics and genealogies.Nature communications · 2026Article
- Isolation of Allocrenothrix methanica reveals distinct ecophysiologies of filamentous methanotrophs and adaptations to O2 limitation.The ISME journal · 2026Article
- Article
- Acute gastrointestinal graft-versus-host disease is associated with reductions of secondary bile acids following allogeneic hematopoietic cell transplantation.Frontiers in microbiology · 2026Article
- Decoding the reproductive microbiome: enabling clinical and biological insights through machine and deep learning.Frontiers in endocrinology · 2026Review
- Beyond AMR and virulence databases: genome wide associations of closely relatedFrontiers in microbiology · 2026Article
- Convergent GenX biodegradation by genomically designed and functionally screened synthetic bacterial consortia.Frontiers in microbiology · 2026Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
32 authors.
Matthew AtonBiodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA.
Daniel McDonaldDepartment of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA.
Jorge Cañardo AlastueyCollege of Engineering and Applied Science, University of Colorado Boulder, Boulder, CO, USA.ORCID http://orcid.org/0009-0005-6608-2859
Raeed AzomBiodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA.
Paarth BatraBiodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA.
Valentyn BezshapkinDepartment of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zurich, Zurich, Switzerland.
Evan BolyenPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.ORCID http://orcid.org/0000-0002-5362-6782
Alexander CagleDepartment of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA.ORCID http://orcid.org/0009-0009-8515-4335
J Gregory CaporasoPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.ORCID http://orcid.org/0000-0002-8865-1670
Justine W DebeliusDepartment of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA.
Kestrel GorlickPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.
Nirmitha HamsanipallyBiodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA.
Lars HungerGutz Analytics, LLC, Boulder, CO, USA.
Aryan KeluskarBiodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA.ORCID http://orcid.org/0009-0000-4587-7955
Disen LiaoCheriton School of Computer Science, University of Waterloo, Waterloo, Ontario, Canada.
Yang Young LuCheriton School of Computer Science, University of Waterloo, Waterloo, Ontario, Canada.ORCID http://orcid.org/0000-0003-1686-5917
Jose A Navas-MolinaDepartment of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-4595-920X
Anders PitmanPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.ORCID http://orcid.org/0009-0000-0925-5753
Jai Ram RideoutPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.ORCID http://orcid.org/0000-0003-2587-1454
Anton SazonovBiodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA.
Bharath SathappanDepartment of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA.
Karen Schwarzberg LipsonPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.
Igor SfiligoiSan Diego Supercomputer Center, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-9308-5327
Chris TapoBiodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA.
Yoshiki Vázquez-BaezaCenter for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-6014-2009
Zijun WuBiodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA.
Zhenjiang Zech XuDepartment of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-1080-024X
Mingsong Sam YeSchool of Business, Stevens Institute of Technology, Hoboken, NJ, USA.
Jianshu ZhaoDepartment of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA.
Rob KnightDepartment of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA. rknight@ucsd.edu.ORCID http://orcid.org/0000-0002-0975-9019
James T MortonGutz Analytics, LLC, Boulder, CO, USA. jamie@gutzanalytics.com.
Qiyun ZhuBiodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA. qiyun.zhu@asu.edu.ORCID http://orcid.org/0000-0002-3568-6271
Funding
U.S. Department of Energy (DOE) DE-SC0024320
Abstract
PubMed holds no abstract for this paper.
Identifiers
PMID
41381898What OpenQuestion holds
Textmetadata
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.