Evidence map›Paper›PMID 41381598›Full record

ArticleScientific data2025

Chromosome level assembly of five Brassica rapa and oleracea accessions expand the resistance genes reservoir.

C Falentin, W J W Thomas, M Boudet, P Le Boulch, A Bourdais, L Maillet, F Legeai, K Labadie, C Cruaud, G Deniot and 4 more

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. The Paraphyletic Origins of Genetic Resistance to Cabbage Stem Flea Beetle inPlant-environment interactions (Hoboken, N.J.) · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

C Falentin *IGEPP, INRAE, Institut Agro, University of Rennes, Le Rheu, 35653, France.
W J W ThomasSchool of Biological Sciences, The University of Western Australia, Perth, WA, Australia.
M BoudetIGEPP, INRAE, Institut Agro, University of Rennes, Le Rheu, 35653, France.
P Le BoulchIGEPP, INRAE, Institut Agro, University of Rennes, Le Rheu, 35653, France.
A BourdaisIGEPP, INRAE, Institut Agro, University of Rennes, Le Rheu, 35653, France.ORCID 0009-0002-2312-6389
L MailletIGEPP, INRAE, Institut Agro, University of Rennes, Le Rheu, 35653, France.
F LegeaiIGEPP, INRAE, Institut Agro, University of Rennes, Le Rheu, 35653, France.ORCID 0000-0002-6472-4839
K LabadieGénoscope, Institut François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, 91057, Evry, France.ORCID 0000-0001-7467-8509
C CruaudGénoscope, Institut François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, 91057, Evry, France.
G DeniotIGEPP, INRAE, Institut Agro, University of Rennes, Le Rheu, 35653, France.
J BatleySchool of Biological Sciences, The University of Western Australia, Perth, WA, Australia.ORCID 0000-0002-5391-5824
A GravotIGEPP, INRAE, Institut Agro, University of Rennes, Le Rheu, 35653, France.
J M Aury *Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, 91057, Evry, France. jmaury@genoscope.cns.fr.ORCID 0000-0003-1718-3010
M Rousseau-Gueutin *IGEPP, INRAE, Institut Agro, University of Rennes, Le Rheu, 35653, France. mathieu.rousseau-gueutin@inrae.fr.ORCID 0000-0002-1130-1090

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-10-INBS-09-08
6 · The paper itself

Abstract

Brassica rapa and B. oleracea are two diploid crops of agronomic importance, which display important phenotypic variation. They are the diploid progenitors of B. napus (oilseed rape), another major crop, which suffers from low genetic diversity. For that reason, B. rapa and B. oleracea are often used to introgress traits of interest into B. napus. In this study we assembled, at the chromosome level, the genomes of three B. oleracea accessions (including a wild type), and largely improved the genome assemblies of two B. rapa genotypes using Oxford Nanopore Technologies and Illumina sequencing. A total of 91.9 to 98.7% of the assembled sequences were anchored to pseudochromosomes. We also produced RNA-Seq data from different organs (flower bud, leaf, root and stem) for gene annotations. Overall, 94.97 to 99.49% of the predicted genes are on pseudomolecules. Finally, we also predicted their resistance gene analogs, including ones unique to each assembly. These five chromosome level assemblies represent a crucial resource to expand the known reservoir of disease resistance genes.

Indexed as

BrassicaBrassica rapaChromosomes, PlantDisease ResistanceGenes, PlantGenome, Plant

Identifiers

PMID41381598
PMCPMC12749581

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.