Evidence map›Paper›PMID 41381564›Full record

ArticleScientific data2025

A transcriptomic profiling across tissues, developmental stages, and types of Nicotiana tabacum.

Kun Yang, Zhijun Tong, Zhefu Li, Fei Xu, Yujie Huang, Xueyi Sui, Xuejun Chen, Enhui Shen, Sanling Wu, Longjiang Fan and 1 more

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Kun Yang *Key Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences, Kunming, Yunnan, 650021, China.
Zhijun Tong *Key Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences, Kunming, Yunnan, 650021, China.ORCID http://orcid.org/0000-0001-9892-0443
Zhefu LiInstitute of Crop Sciences & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China.
Fei XuInstitute of Crop Sciences & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China.
Yujie HuangInstitute of Crop Sciences & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China.
Xueyi SuiKey Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences, Kunming, Yunnan, 650021, China.
Xuejun ChenKey Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences, Kunming, Yunnan, 650021, China.
Enhui ShenInstitute of Crop Sciences & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China.
Sanling WuAnalysis Center of Agrobiology and Environmental Sciences, Faculty of Agriculture, Life and Environment Sciences, Zhejiang University, Hangzhou, 310058, China.
Longjiang FanInstitute of Crop Sciences & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China. fanlj@zju.edu.cn.
Bingguang XiaoKey Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences, Kunming, Yunnan, 650021, China. xiaobgsubmission@126.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nicotiana tabacum is one of the most important globally economic crops and also a model plant for studying secondary metabolism. N. tabacum is further classified into different types such as flue-cured, cigar, and sun-cured and so on, which produces distinct secondary profiles. However, the gene expression differences among types remains gaps. Here, we generated a large-scale transcriptomic profiling across tissues (root, stem, leaf and flower), developmental stages (rosette, vigorous growth, topping and harvest stage) and types (flue-cured and cigar type) of N. tabacum, resulting in a total of 72 high-quality datasets from 24 samples (three replicates per sample). The dataset by this study provides a valuable resource for researchers engaged in studying on plant secondary products.

Indexed as

Gene Expression ProfilingNicotianaTranscriptomePlant Leaves

Identifiers

PMID41381564
PMCPMC12830376

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.