Evidence map›Paper›PMID 41381528›Full record

ArticleNature communications2025

Structural and immunological characterization of the H3 influenza hemagglutinin during antigenic drift.

Rebeca de Paiva Froes Rocha, Ilhan Tomris, Charles A Bowman, Emma Stevens, Jason Kantorow, Corinna M Plitt, Weiwei Peng, Svearike Oeverdieck, Thales Galdino Andrade, James A Ferguson and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Rebeca de Paiva Froes RochaDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.
Ilhan TomrisDepartment of Chemical Biology and Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0001-8523-0136
Charles A BowmanDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.
Emma StevensDepartment of Chemical Engineering, Northeastern University, Boston, MA, USA.ORCID http://orcid.org/0009-0002-5536-7814
Jason KantorowDepartment of Chemical Engineering, Northeastern University, Boston, MA, USA.ORCID http://orcid.org/0000-0003-1384-6112
Corinna M PlittBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht Institute of Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands.
Weiwei PengBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht Institute of Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands.
Svearike OeverdieckDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0009-0009-5210-7516
Thales Galdino AndradeDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.
James A FergusonDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.
Diana D JungDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.
Rafael Elias MarquesBrazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.
Sander HerfstDepartment of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0001-9866-8903
Joost SnijderBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht Institute of Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0002-9310-8226
Srirupa ChakrabortyDepartment of Chemical Engineering, Northeastern University, Boston, MA, USA.ORCID http://orcid.org/0000-0002-7155-2764
Alba Torrents de la PeñaDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.
Zachary T BerndsenDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA. zberndsen@missouri.edu.ORCID http://orcid.org/0000-0003-4531-9907
Robert P de VriesDepartment of Chemical Biology and Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands. r.vries@uu.nl.ORCID http://orcid.org/0000-0002-1586-4464
Andrew B WardDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA. andrew@scripps.edu.ORCID http://orcid.org/0000-0001-7153-3769

Funding

XRAY CRYSTALLOGRAPHIC STRUCTURE ANALYSIS: PROTEIN SORTINGP41RR001081 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GODDARD, THOMAS · 1985 to 2011
$17.6M
Gates Foundation INV-004923NCRR NIH HHS P41 RR001081
6 · The paper itself

Abstract

The quest for a universal influenza vaccine holds great promise for mitigating the global burden of influenza-related morbidity and mortality. However, challenges persist in identifying conserved epitopes capable of eliciting robust and durable immune responses. In this study, we explore the influence of glycan evolution on H3 hemagglutinin from 1968 to present day and its impacts on protein structure, antigenicity and immunogenicity by using computational, biochemical and biophysical techniques. Structural characterization of HK/68 and Sing/16 by cryo-electron microscopy shows that while HK/68 is resistant to enzymatic deglycosylation, removal of glycans destabilizes the hyperglycosylated head and membrane-proximal region in Sing/16. Furthermore, the appearance of glycans in Sing/16 hemagglutinin head domain shifts the polyclonal immune response upon vaccination to target the esterase and stem. These insights expand our understanding of glycans beyond their role in protein folding and highlight the interplay among glycan integration and immune recognition to design a universal influenza vaccine.

Indexed as

Antigenic Drift and ShiftHemagglutinin Glycoproteins, Influenza VirusInfluenza A virusAnimalsAntigens, ViralCryoelectron MicroscopyEpitopesGlycosylationHumansInfluenza, HumanInfluenza VaccinesPolysaccharidesAntigens, ViralEpitopesHemagglutinin Glycoproteins, Influenza VirusInfluenza VaccinesPolysaccharides

Identifiers

PMID41381528
PMCPMC12749422

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.