Evidence map›Paper›PMID 41381525›Full record

ArticleNature communications2025

DNA Wrapping by a tetrameric bacterial histone.

Yimin Hu, Samuel Schwab, Kaiyu Qiu, Yunsen Zhang, Kerstin Bär, Heidi Reichle, Aurora Panzera, Andrei N Lupas, Marcus D Hartmann, Remus T Dame and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yimin HuDepartment of Protein Evolution, Max Planck Institute for Biology Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0002-6965-8965
Samuel Schwab *Leiden Institute of Chemistry, Leiden University, Leiden, The Netherlands; Centre for Microbial Cell Biology, Leiden University, Leiden, The Netherlands; Centre for Interdisciplinary Genome Research, Leiden University, Leiden, The Netherlands.ORCID http://orcid.org/0009-0003-9528-7736
Kaiyu Qiu *Department of Protein Evolution, Max Planck Institute for Biology Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0002-0676-850X
Yunsen ZhangTheoretical and Computational Biophysics Group, Beckman Institute for Advanced Science and Technology, Center of Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, USA.ORCID http://orcid.org/0000-0003-3476-6728
Kerstin BärDepartment of Protein Evolution, Max Planck Institute for Biology Tübingen, Tübingen, Germany.
Heidi ReichleDepartment of Protein Evolution, Max Planck Institute for Biology Tübingen, Tübingen, Germany.
Aurora PanzeraBioOptics Facility, Max Planck Institute for Biology Tübingen, Tübingen, Germany.ORCID http://orcid.org/0009-0002-5117-0854
Andrei N LupasDepartment of Protein Evolution, Max Planck Institute for Biology Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0002-1959-4836
Marcus D HartmannDepartment of Protein Evolution, Max Planck Institute for Biology Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0001-6937-5677
Remus T DameLeiden Institute of Chemistry, Leiden University, Leiden, The Netherlands; Centre for Microbial Cell Biology, Leiden University, Leiden, The Netherlands; Centre for Interdisciplinary Genome Research, Leiden University, Leiden, The Netherlands.ORCID http://orcid.org/0000-0001-9863-1692
Vikram AlvaDepartment of Protein Evolution, Max Planck Institute for Biology Tübingen, Tübingen, Germany. vikram.alva@tuebingen.mpg.de.ORCID http://orcid.org/0000-0003-1188-473X
Birte Hernandez AlvarezDepartment of Protein Evolution, Max Planck Institute for Biology Tübingen, Tübingen, Germany. birte.hernandez@tuebingen.mpg.de.ORCID http://orcid.org/0000-0003-0635-8698

Funding

Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) OCENW.GROOT.2019.012
6 · The paper itself

Abstract

Histones are conserved DNA-packaging proteins found across all domains of life. In eukaryotes, canonical histones form octamers that wrap ~147 base pairs (bp) of DNA into nucleosomes, while in archaea they form dimers that polymerize into extended hypernucleosomes. Although bacteria were long thought to lack histones, homologs have now been identified in diverse lineages. We previously characterized the histone HBb from Bdellovibrio bacteriovorus, which binds and bends DNA as a dimer. Here, we describe HLp from Leptospira perolatii and show by crystallographic and biophysical analyses that, unlike HBb, it forms stable tetramers and binds DNA nonspecifically, wrapping ~60 bp of DNA around its core. Molecular dynamics simulations, DNA-binding assays, and heterologous expression in Escherichia coli, where HLp reorganizes the nucleoid, support a role in bacterial chromatin organization. These findings expand the repertoire of bacterial histone-DNA interactions and highlight the diversity of histone-based genome organization across the tree of life.

Indexed as

Bacterial ProteinsDNA, BacterialHistonesLeptospiraCrystallography, X-RayEscherichia coliMolecular Dynamics SimulationNucleosomesProtein BindingProtein MultimerizationBacterial ProteinsDNA, BacterialHistonesNucleosomes

Identifiers

PMID41381525
PMCPMC12701072

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.