Evidence map›Paper›PMID 41381498›Full record

ArticleNature communications2025

Analytic Fourier ptychotomography for aberration-free and high-resolution volumetric refractive index imaging.

Zhenyu Dong, Haowen Zhou, Ruizhi Cao, Oumeng Zhang, Shi Zhao, Panlang Lyu, Reinaldo Alcalde, Changhuei Yang

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Zhenyu Dong *Department of Electrical Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0009-0003-4507-8493
Haowen Zhou *Department of Electrical Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0003-0955-4010
Ruizhi Cao *Department of Electrical Engineering, California Institute of Technology, Pasadena, CA, USA. rcao@alumni.caltech.edu.ORCID http://orcid.org/0000-0003-3385-446X
Oumeng ZhangDepartment of Electrical Engineering, California Institute of Technology, Pasadena, CA, USA.
Shi ZhaoDepartment of Electrical Engineering, California Institute of Technology, Pasadena, CA, USA.
Panlang LyuDepartment of Electrical Engineering, California Institute of Technology, Pasadena, CA, USA.
Reinaldo AlcaldeDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0002-3430-5393
Changhuei YangDepartment of Electrical Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0001-8791-0354

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Three-dimensional (3D) refractive index tomography offers label-free quantitative volumetric imaging. However, existing tomography approaches are limited by optical aberrations, limited resolution, and computational complexity. To overcome these issues, we propose Analytic Fourier Ptychotomography (AFP), a computational microscopy technique that analytically reconstructs aberration-free, complex-valued 3D refractive index distributions without iterative optimization or axial scanning. AFP employs a unique prior based on the finite sample thickness to recast the inverse scattering problem into analytically solvable linear equations. Unlike iterative methods, AFP does not require parameter tuning and computationally intensive optimizations, and can achieve efficient, robust, and generalizable image reconstructions across diverse samples and systems. We experimentally demonstrated that AFP greatly enhanced image quality and resolution under various aberration conditions across a range of applications. AFP corrected aberrations associated with 25 Zernike modes (with maximal phase difference of 2.3π and maximal Zernike coefficient value of 4), extended the synthetic numerical aperture from 0.41 to 0.99, and provided a two-fold resolution enhancement in all directions. With its simplicity, robustness, and broad applicability, AFP offers a user-friendly imaging platform for quantitative 3D analysis in biology, microbial ecology, and clinical science.

Identifiers

PMID41381498
PMCPMC12820392

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.