Evidence map›Paper›PMID 41381450›Full record

ArticleNature communications2025

Ran modulates allosteric crosstalk between importin β surfaces.

Ying-Hui Ko, Fenglin Li, Stephanie S Suinn, Junwei Li, Chun-Feng David Hou, Ravi K Lokareddy, Gino Cingolani

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Viral interference of nucleocytoplasmic transport.The Journal of biological chemistry · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Ying-Hui KoDepartment of Biochemistry and Molecular Genetics, The University of Alabama at Birmingham, Birmingham, AL, USA.
Fenglin LiDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0001-7932-0071
Stephanie S SuinnDepartment of Biochemistry and Molecular Genetics, The University of Alabama at Birmingham, Birmingham, AL, USA.ORCID http://orcid.org/0000-0003-1990-204X
Junwei LiDepartment of Biochemistry and Molecular Genetics, The University of Alabama at Birmingham, Birmingham, AL, USA.
Chun-Feng David HouInstitute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.ORCID http://orcid.org/0000-0002-1820-9588
Ravi K LokareddyDepartment of Biochemistry and Molecular Genetics, The University of Alabama at Birmingham, Birmingham, AL, USA.
Gino CingolaniDepartment of Biochemistry and Molecular Genetics, The University of Alabama at Birmingham, Birmingham, AL, USA. gcingola@uab.edu.ORCID http://orcid.org/0000-0002-9206-9640

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Omer Jamy · 1985 to 2026
$165.9M
The Stanford-SLAC CryoEM Center supplementU24GM129541 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH, HEDMAN, BRITT · 2018 to 2023
$54.8M
NCCAT: National Center for CryoEM Access and Training- Supplement for Windows 10 and FFIU24GM129539 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2018 to 2023
$53.9M
Mechanism of Viral Genome Delivery into CellsR35GM140733 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI CINGOLANI, GINO · 2021 to 2025
$2.8M
Multisubunit viral ATPases that couple ATP-hydrolysis to genome translocationR01GM100888 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI CINGOLANI, GINO · 2012 to 2020
$2.5M
Acquisition of cryo-electron microscopeS10OD024978 · OD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DOKLAND, TERJE · 2020 to 2020
$2.0M
Structural Basis for HIV-1 Rev Nucleocytoplasmic TraffickingF31AI191950 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Stephanie Suinn · 2025 to 2026
$87k
NCI NIH HHS 75N91019D00024NCI NIH HHS P30 CA013148NIAID NIH HHS F31 AI191950NIGMS NIH HHS R01 GM100888NIGMS NIH HHS R35 GM140733NIGMS NIH HHS U24 GM129539NIGMS NIH HHS U24 GM129541NIH HHS S10 OD024978
6 · The paper itself

Abstract

A cellular gradient of the GTPase Ran orchestrates the movement of import and export complexes through the Nuclear Pore Complex (NPC). Ran-GTP modulates two essential activities of importin β during nuclear import. On the one hand, it reduces the avidity of importin β for phenylalanine-glycine-rich nucleoporins (FG-nups), thereby facilitating the passage of import complexes through the permeability barrier. On the other hand, it disassembles import complexes, releasing the import cargo into the nucleus. The precise mechanisms by which Ran-GTP modulates importin β activities have remained hypothetical. Leveraging cryogenic electron microscopy (cryo-EM) single-particle analysis, in this paper, we describe five distinct conformational states of importin β in complex with various effectors encountered during an import reaction, specifically IBB-cargos, FG-repeats, Ran-GTP, Ran-GTP:RanBP1, and Ran-GDP:RanBP1. Comparing these states allows us to decipher the conformational landscape of importin β without interference from crystallization agents and lattice forces. By correlating structural data with biochemical activities, we find that Ran-GTP, but not Ran-GDP, constrains the solenoid structure of importin β, closing high-affinity FG-binding pockets and displacing import cargos through allosteric crosstalk between the concave and convex surfaces. We propose that this allosteric mechanism is relevant to other β-karyopherins involved in nuclear import.

Indexed as

beta Karyopherinsran GTP-Binding ProteinActive Transport, Cell NucleusAllosteric RegulationCryoelectron MicroscopyGuanosine TriphosphateHumansNuclear PoreNuclear Pore Complex ProteinsNuclear ProteinsProtein BindingProtein Conformationbeta KaryopherinsGuanosine TriphosphateNuclear Pore Complex ProteinsNuclear Proteinsran-binding protein 1ran GTP-Binding Protein

Identifiers

PMID41381450
PMCPMC12749841

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.