Evidence map›Paper›PMID 41379617›Full record

ArticleCell reports2025

Neuronal hyperactivity becomes mTORC1 independent due to transcriptional changes in tuberous sclerosis complex disease models.

Wardiya Afshar-Saber, Juan F Ruiz, Isabel Gisser, Ziqin Yang, Leena Mehendale, Nicole A Teaney, Rachel Hobson, Madison R Glass, Truc T Pham, Elizabeth Bainbridge and 2 more

Abstract read
In one paragraph

Article in Cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Tuberous sclerosis complex.Nature reviews. Disease primers · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Wardiya Afshar-SaberDepartment of Neurology, Boston Children's Hospital, Boston, MA 02115, USA.
Juan F RuizDepartment of Neurology, Boston Children's Hospital, Boston, MA 02115, USA.
Isabel GisserDepartment of Neurology, Boston Children's Hospital, Boston, MA 02115, USA.
Ziqin YangDepartment of Neurology, Boston Children's Hospital, Boston, MA 02115, USA.
Leena MehendaleDepartment of Neurology, Boston Children's Hospital, Boston, MA 02115, USA.
Nicole A TeaneyDepartment of Neurology, Boston Children's Hospital, Boston, MA 02115, USA.
Rachel HobsonDepartment of Neurology, Boston Children's Hospital, Boston, MA 02115, USA.
Madison R GlassDepartment of Neurology, Boston Children's Hospital, Boston, MA 02115, USA.
Truc T PhamDepartment of Neurology, Boston Children's Hospital, Boston, MA 02115, USA.
Elizabeth BainbridgeDepartment of Neurology, Boston Children's Hospital, Boston, MA 02115, USA.
Mustafa SahinDepartment of Neurology, Boston Children's Hospital, Boston, MA 02115, USA. Electronic address: mustafa.sahin@childrens.harvard.edu.
Kellen D WindenDepartment of Neurology, Boston Children's Hospital, Boston, MA 02115, USA. Electronic address: kellen.winden@childrens.harvard.edu.

Funding

Supplement request for Training GrantT32NS007473 · NINDS · CHILDREN'S HOSPITAL BOSTON · PI Elizabeth C. Engle, Thomas L. Schwarz · 1999 to 2026
$6.9M
Mouse Neurodevelopmental Behavior CoreU54HD090255 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI POMEROY, SCOTT LOREN · 2016 to 2020
$5.2M
Disrupted ciliary signaling in the brain pathology of Tuberous Sclerosis Complex (Diversity Supplement)R01NS113591 · NINDS · BOSTON CHILDREN'S HOSPITAL · PI SAHIN, MUSTAFA · 2019 to 2022
$2.9M
Molecular Mechanisms of Neuronal Hyperactivity in Tuberous Sclerosis ComplexK08NS112598 · NINDS · BOSTON CHILDREN'S HOSPITAL · PI WINDEN, KELLEN · 2020 to 2024
$963k
NICHD NIH HHS U54 HD090255NINDS NIH HHS K08 NS112598NINDS NIH HHS R01 NS113591NINDS NIH HHS T32 NS007473
6 · The paper itself

Abstract

Tuberous sclerosis complex (TSC) is caused by variants in either TSC1 or TSC2, which cooperate to inhibit the mechanistic target of rapamycin complex 1 (mTORC1). TSC is associated with neurological disorders that are attributed to disinhibition of mTORC1, but the mechanisms connecting dysregulation of mTORC1 to molecular and physiological changes in neurons remain unclear. In this study, we aim to understand transcriptional changes in TSC and identify downregulation of the immediate-early gene EGR1 in TSC2-deficient excitatory neurons. Furthermore, we find that activity-dependent transcription is impaired in TSC due to abnormalities in maturation-dependent DNA demethylation. Finally, we determine that mTORC1 inhibition started late in neuronal maturation of human neurons is only partially effective in reversing gene expression changes and ineffective in reducing spontaneous neuronal hyperactivity in TSC. These data demonstrate a critical window in early brain development where mTORC1 dysregulation leads to transcriptional changes that contribute to persistent neuronal abnormalities.

Indexed as

Mechanistic Target of Rapamycin Complex 1NeuronsTranscription, GeneticTuberous SclerosisAnimalsDisease Models, AnimalDNA MethylationEarly Growth Response Protein 1HumansMiceTuberous Sclerosis Complex 1 ProteinTuberous Sclerosis Complex 2 ProteinEarly Growth Response Protein 1Mechanistic Target of Rapamycin Complex 1TSC2 protein, humanTuberous Sclerosis Complex 1 ProteinTuberous Sclerosis Complex 2 Proteinactivity-dependent transcriptionCP: molecular biologyCP: neuroscienceDNA methylationmTOR complex 1tuberous sclerosis complex

Identifiers

PMID41379617
PMCPMC12865816

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.