Evidence map›Paper›PMID 41379265›Full record

ArticleJournal of assisted reproduction and genetics2026

Genes with abnormal DNA methylation in chorionic villi of spontaneous abortions with monosomy X.

Ekaterina N Tolmacheva, Daria I Zhigalina, Oksana Yu Vasilyeva, Victoria V Demeneva, Svetlana A Filatova, Daniil G Shevtsov, Elizaveta A Fonova, Elena A Sazhenova, Tatyana V Nikitina, Igor N Lebedev and 1 more

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Article in Journal of assisted reproduction and genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

11 authors.

Ekaterina N TolmachevaResearch Institute of Medical Genetics, Tomsk National Research Medical Center, Nab. R. Ushaiki, 10, Tomsk, Russia.ORCID http://orcid.org/0000-0001-6427-3276
Daria I ZhigalinaResearch Institute of Medical Genetics, Tomsk National Research Medical Center, Nab. R. Ushaiki, 10, Tomsk, Russia.ORCID http://orcid.org/0000-0003-2800-8875
Oksana Yu VasilyevaResearch Institute of Medical Genetics, Tomsk National Research Medical Center, Nab. R. Ushaiki, 10, Tomsk, Russia.ORCID http://orcid.org/0000-0001-5797-0014
Victoria V DemenevaResearch Institute of Medical Genetics, Tomsk National Research Medical Center, Nab. R. Ushaiki, 10, Tomsk, Russia.ORCID http://orcid.org/0000-0002-5315-4914
Svetlana A FilatovaResearch Institute of Medical Genetics, Tomsk National Research Medical Center, Nab. R. Ushaiki, 10, Tomsk, Russia.ORCID http://orcid.org/0000-0002-9344-0253
Daniil G ShevtsovResearch Institute of Medical Genetics, Tomsk National Research Medical Center, Nab. R. Ushaiki, 10, Tomsk, Russia.ORCID http://orcid.org/0000-0002-9817-7669
Elizaveta A FonovaResearch Institute of Medical Genetics, Tomsk National Research Medical Center, Nab. R. Ushaiki, 10, Tomsk, Russia.ORCID http://orcid.org/0000-0002-1338-5451
Elena A SazhenovaResearch Institute of Medical Genetics, Tomsk National Research Medical Center, Nab. R. Ushaiki, 10, Tomsk, Russia.ORCID http://orcid.org/0000-0003-3875-3932
Tatyana V NikitinaResearch Institute of Medical Genetics, Tomsk National Research Medical Center, Nab. R. Ushaiki, 10, Tomsk, Russia.ORCID http://orcid.org/0000-0002-4230-6855
Igor N LebedevResearch Institute of Medical Genetics, Tomsk National Research Medical Center, Nab. R. Ushaiki, 10, Tomsk, Russia.ORCID http://orcid.org/0000-0002-0482-8046
Stanislav A VasilyevResearch Institute of Medical Genetics, Tomsk National Research Medical Center, Nab. R. Ushaiki, 10, Tomsk, Russia. stanislav.vasilyev@medgenetics.ru.ORCID http://orcid.org/0000-0002-5301-070X

Funding

Russian Science Foundation 23-15-00341
6 · The paper itself

Abstract

purposeThe purpose of this study was to identify genes in the placenta of monosomy X embryos whose methylation abnormalities may be associated with embryonic death.

methodsMethylation levels were assessed via reduced representation bisulfite sequencing of the chorionic villi of embryos from 8 spontaneous abortions during the first trimester of pregnancy with the 45,X karyotype and 7 embryos from medical abortions with the 46,XX and 46,XY karyotypes. The methylation levels of several identified differentially methylated genes were analyzed in 22 embryos from spontaneous abortions with monosomy X compared with 11 embryos from medical abortions using targeted bisulfite massive parallel sequencing.

resultsCompared with embryos with 46,XX and 46,XY karyotypes, respectively, differentially methylated CpG sites in embryos with monosomy X were located in 831 and 254 differentially methylated genes (DMGs). However, only 74 DMGs were unique for 45,X embryos after subtraction of the DMG of spontaneously aborted embryos with a normal karyotype (n = 4). Compared with embryos of both sexes, 48 genes in embryos with monosomy X were differentially methylated, 21 of which are important in normal placental and embryonic development and whose dysregulation is linked to preeclampsia and embryonic death. Targeted analysis confirmed that the ALCAM gene is hypermethylated and that the BDH1 gene is hypomethylated in embryos with monosomy X.

conclusionAberrant methylation of genes involved in placentation, proliferation, and cell differentiation has been detected in spontaneously aborted embryos with monosomy X. These disorders may be associated with the high lethality of embryos with monosomy X.

Indexed as

Abortion, SpontaneousChorionic VilliDNA MethylationMonosomyAdultChromosomes, Human, XCpG IslandsEmbryonic DevelopmentFemaleHumansMalePlacentaPregnancyAneuploidyDNA methylationMiscarriageMonosomy X

Identifiers

PMID41379265
PMCPMC12901766

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.