Evidence map›Paper›PMID 41379254›Full record

ArticlePhotosynthesis research2025

New chlorophylls designed by theoretical spectroscopy and machine learning.

Fabian Weber, Simon Petry, Dennis J Nürnberg, Jan P Götze

Abstract read
In one paragraph

Article in Photosynthesis research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

4 authors.

Fabian WeberFreie Universität Berlin, Fachbereich Biologie Chemie Pharmazie, Physikalische und Theoretische Chemie, Arnimallee 22, 14195, Berlin, Germany.
Simon PetryFreie Universität Berlin, Fachbereich Biologie Chemie Pharmazie, Physikalische und Theoretische Chemie, Arnimallee 22, 14195, Berlin, Germany.
Dennis J NürnbergFreie Universität Berlin, Fachbereich Physik, Experimentelle Biophysik, Arnimallee 14, 14195, Berlin, Germany.
Jan P GötzeFreie Universität Berlin, Fachbereich Biologie Chemie Pharmazie, Physikalische und Theoretische Chemie, Arnimallee 22, 14195, Berlin, Germany. jan.goetze@fu-berlin.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The main pigment for oxygenic photosynthesis, chlorophyll (Chl) a, is structurally related to several other Chl variants, naturally occurring mostly with mono-oxidized substitutions. These include Chl b, Chl d and Chl f and divinyl chlorophylls (DVChls) a and b. In this contribution, we computationally explore an expanded set of over 250,000 Chl variants, looking for potentially interesting targets for synthetic biology. We focus on optical properties, employing a machine learning (ML) approach and subsequently verifying the corresponding predictions using time-dependent density functional theory (TD-DFT) and multireference DFT (DFT/MRCI). We find that (i) Chl f is the best monosubstituted red-shifted Chl, as no other Chl in our set exceeds Chl f in terms of both red shift and absorption intensity, (ii) Chl b is not the best Chl to harvest photons from the green region of the optical spectrum, as several other Chls with the same or better green absorbance were identified (most notably DVChl b) and (iii) the T1 energy of Chls can be slightly adapted. The latter would enable experiments to determine whether it is beneficial having the T1 transition energy located between the two lowest O2 singlet state transitions, as it is found for Chl a. This might be a prerequisite for stable, efficient oxygen generation. Our ML approach thus provides a comprehensive overview on an extensive subset of potential Chl modifications that could be used for tuning oxygenic photosynthesis, if suitable synthesis pathways can be found.

Indexed as

ChlorophyllMachine LearningSpectrum AnalysisChlorophyll APhotosynthesisChlorophyllChlorophyll Achlorophyll bChlorophyllDensity functional theoryMachine learningUV/vis spectroscopy

Identifiers

PMID41379254
PMCPMC12698835

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.