Evidence map›Paper›PMID 41377896›Full record

ArticleHuman mutation2025

Integrative Transcriptomic and Machine Learning Analysis Identifies Key Senescence-Associated Secretory Phenotype Genes Associated With Immune Dysregulation in Periodontitis.

Jing Zeng, Jing Huang, Juan He, Jianqin Tan, Mianmian Duan, Yanyan Song, Lin Yang

Abstract read
In one paragraph

Article in Human mutation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jing ZengDepartment of Stomatology, The Second Affiliated Hospital of Guizhou University of Traditional Chinese Medicine, Guiyang City, Guizhou Province, China.ORCID 0009-0007-6985-2219
Jing HuangDepartment of Stomatology, The Central Hospital of Enshi Tujia and Miao Autonomous Prefecture, Enshi City, Enshi Tujia and Miao Autonomous Prefecture, Hubei Province, China.ORCID 0009-0001-7659-4226
Juan HeDepartment of Stomatology, The Second Affiliated Hospital of Guizhou University of Traditional Chinese Medicine, Guiyang City, Guizhou Province, China.ORCID 0009-0002-6204-6787
Jianqin TanDepartment of Stomatology, The Second Affiliated Hospital of Guizhou University of Traditional Chinese Medicine, Guiyang City, Guizhou Province, China.ORCID 0009-0008-9147-6229
Mianmian DuanDepartment of Stomatology, The Second Affiliated Hospital of Guizhou University of Traditional Chinese Medicine, Guiyang City, Guizhou Province, China.ORCID 0009-0002-1966-2082
Yanyan SongDepartment of Stomatology, The Second Affiliated Hospital of Guizhou University of Traditional Chinese Medicine, Guiyang City, Guizhou Province, China.ORCID 0009-0004-7375-1638
Lin YangDepartment of Stomatology, Guiyang Stomatological Hospital, Guiyang City, Guizhou Province, China.ORCID 0009-0002-5091-740X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Periodontitis (PD) is a chronic inflammatory disorder marked by immune dysregulation and progressive tissue destruction. Cellular senescence and the senescence-associated secretory phenotype (SASP) have been increasingly recognized as pivotal drivers of chronic inflammation. However, their specific contributions to PD remain insufficiently clarified. In this study, integrative bioinformatic analyses were conducted across transcriptomic datasets, employing least absolute shrinkage and selection operator, support vector machine-recursive feature elimination, and eXtreme gradient boosting algorithms to identify SASP-related genes of significance. ICAM1, CXCL12, and MMP3 were found to be markedly upregulated in PD and demonstrated strong diagnostic potential through receiver operating characteristic and artificial neural network models. Functional enrichment analysis indicated their involvement in immune cell adhesion, migration, and infection-associated pathways. Immune infiltration profiling revealed disrupted immune landscapes, with ICAM1 exhibiting a negative correlation with resting mast cells. Experimental validation using real-time quantitative polymerase chain reaction and immunohistochemistry on clinical samples confirmed elevated expression of these genes at both the mRNA and protein levels. Moreover, dexamethasone was identified via molecular docking as a potential therapeutic compound targeting ICAM1 and CXCL12. Collectively, these findings advance the understanding of SASP associated with immune regulation in PD and suggest potential biomarkers and therapeutic targets for early diagnosis and intervention.

Indexed as

Cellular SenescencePeriodontitisChemokine CXCL12Datasets as TopicDexamethasoneDrug Delivery SystemsGene Expression ProfilingGene Regulatory NetworksGingivaHumansInflammationIntercellular Adhesion Molecule-1Machine LearningMatrix Metalloproteinase 3Models, GeneticMolecular Docking SimulationChemokine CXCL12CXCL12 protein, humanDexamethasoneICAM1 protein, humanIntercellular Adhesion Molecule-1Matrix Metalloproteinase 3MMP3 protein, humanbiomarkersimmune infiltrationmachine learningmultiomicsperiodontitissenescence-associated secretory phenotypetranscriptomics

Identifiers

PMID41377896
PMCPMC12688647

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.