Evidence map›Paper›PMID 41376061›Full record

ArticleFoods (Basel, Switzerland)2025

AraR Transcription Factor Affects the Sugar Metabolism and Acid Tolerance of

Lili Zhao, Mengrong Chen, Chunjing Fu, Tao Pan, Qiling Chen

Abstract read
In one paragraph

Article in Foods (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Lili ZhaoCollege of Economics and Management, Pu'er University, Pu'er 665000, China.ORCID 0000-0003-2605-7171
Mengrong ChenCollege of Food Science and Pharmacy, Xinjiang Agricultural University, Urumqi 830052, China.
Chunjing FuCollege of Food Science and Pharmacy, Xinjiang Agricultural University, Urumqi 830052, China.
Tao PanCollege of Economics and Management, Pu'er University, Pu'er 665000, China.
Qiling ChenCollege of Food Science and Pharmacy, Xinjiang Agricultural University, Urumqi 830052, China.

Funding

Key Research and Development Program of the Xinjiang Uygur Autonomous Region 2023B02029National Natural Science Foundation of China Youth Science Fund Project 32302049
6 · The paper itself

Abstract

Microorganism employs sophisticated strategies to adapt to acidic environments, with transcription factors occupying pivotal nodes within their hierarchical regulatory networks. In this study, we performed functional characterization of the AraR transcription factor LP_RS14895 via integrated multiomics approaches. RNA sequencing revealed 40 acid-responsive targets that were enriched in pathways related to pentose/glucuronate interconversions and amino sugar and nucleotide sugar metabolism. A genome-wide binding analysis via DAP-seq identified 1279 interaction sites and the most significantly enriched motif is "ARCCMATMAHC". The results revealed that AraR plays a crucial role in regulating acid tolerance and metabolizable sugar (including arabinose, glucose, fructose, ribose, mannose, and trehalose). Overall, these findings offer mechanistic insights into microbial stress responses and provide a valuable method for addressing inhibitory processes of carbohydrate metabolizability under high-acid conditions.

Indexed as

acid stressAraRcarbohydrate utilizeLactiplantibacillus plantarum

Identifiers

PMID41376061
PMCPMC12691998

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.