Evidence map›Paper›PMID 41375296›Full record

ReviewPlants (Basel, Switzerland)2025

Molecular Network Analysis in Model and Non-Model Legumes: Challenges in Omics Data Interpretation Across Species, with a Focus on

Nayla Zalzalah, Jakob Bruggink, Mohamad Elian, Simon Lackey, Julia C Wozny, Siwar Haidar, Elroy R Cober, Tim Xing, Bahram Samanfar

Abstract readReview
PubMed Full text at PMC Publisher
In one paragraph

Review in Plants (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Nayla ZalzalahOttawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, Canada.
Jakob BrugginkOttawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, Canada.
Mohamad ElianOttawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, Canada.
Simon LackeyOttawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, Canada.ORCID 0009-0004-5226-8719
Julia C WoznyOttawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, Canada.
Siwar HaidarOttawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, Canada.ORCID 0000-0003-3882-4606
Elroy R CoberOttawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, Canada.ORCID 0000-0002-4673-1808
Tim XingDepartment of Biology, Ottawa Institute of Systems Biology, Carleton University, Ottawa, ON K1S 5B6, Canada.
Bahram SamanfarOttawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, Canada.ORCID 0000-0001-6625-2153

Funding

Agriculture and Agri-Food Canada N/ACFCRA N/AGFO N/ANSERC NOA - NSERC - 315328
6 · The paper itself

Abstract

Molecular network analysis offers powerful insights for plant improvement by capturing complex regulatory interactions. However, translating omics data across species presents significant challenges. Non-model crops such as soybean and lupin often lack comprehensive genomic resources, which complicates network analysis. Model species (e.g.,

Indexed as

co-expression networkscross-species gene analysisGlycine maxlegumesLupinus albusMedicago truncatulamolecular network analysisnon-model plantsomics data integrationorphan crops

Identifiers

PMID41375296
PMCPMC12694156

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.