Evidence map›Paper›PMID 41374989›Full record

ArticleCancers2025

Transcription Factor Networks Drive Tumor Progression and Immune Microenvironment Remodeling in Hepatocellular Carcinoma.

Sang Hoon Lee, Ju Won Ahn, Wonbin Choi, Jina Kim, Joon Yeon Hwang, Jae-Hwan Kim, Hyaekang Kim, Woori Kwak

Abstract read
In one paragraph

Article in Cancers, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sang Hoon LeeDepartment of Digital Health, Samsung Advanced Institute for Health Sciences & Technology, Sungkyunkwan University, Seoul 06355, Republic of Korea.
Ju Won AhnDepartment of Medical and Biological Sciences, The Catholic University of Korea, Bucheon 14662, Republic of Korea.
Wonbin ChoiDepartment of Biomedical Science, College of Life Science, CHA University, Seongnam 13488, Republic of Korea.
Jina KimDepartment of Biotechnology, The Catholic University of Korea, Bucheon 14662, Republic of Korea.ORCID 0009-0000-1253-4518
Joon Yeon HwangDepartment of Health Sciences and Technology, Samsung Advanced Institute for Health Sciences & Technology, Sungkyunkwan University, Seoul 06355, Republic of Korea.ORCID 0009-0003-5557-7990
Jae-Hwan KimDepartment of Biomedical Science, College of Life Science, CHA University, Seongnam 13488, Republic of Korea.
Hyaekang KimBio-Resources Bank Division, Nakdonggang National Institute of Biological Resources, Sangju 37242, Republic of Korea.
Woori KwakDepartment of Medical and Biological Sciences, The Catholic University of Korea, Bucheon 14662, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

(1) Background: Hepatocellular carcinoma (HCC) remains a major cause of cancer mortality and is characterized by pronounced inter- and intra-tumoral heterogeneity and therapy resistance. We aimed to define core transcriptional circuits that drive HCC malignancy and to delineate how these programs shape the tumor microenvironment (TME). (2) Methods: We integrated single-cell, spatial, and bulk transcriptomic datasets from public cohorts. (3) Results: We identified nine tumor-restricted transcription factors (TFs)-HTATIP2, HES6, ILF2, E2F1, MYBL2, DDIT3, FOXM1, HMGA1, and ETV4-whose expression and regulon activity associated with malignant phenotypes and poor survival. These TFs organize a progression axis from an early proliferative state (cluster C4) toward an invasive, metabolically adapted state (cluster C1) enriched for hypoxia, epithelial-mesenchymal transition (EMT), and inflammatory signaling. The C1 state remodeled the TME by establishing an immunosuppressive niche marked by expansion of T regulatory cells (Treg) and by accumulation of SPP1

Indexed as

cancer progressionhepatocellular carcinoma (HCC)immune evasionmacrophagessingle-cell RNA-seqSPP1transcription factorstumor microenvironment (TME)

Identifiers

PMID41374989
PMCPMC12691271

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.