Evidence map›Paper›PMID 41373562›Full record

ArticleInternational journal of molecular sciences2025

Interaction Between Enhancers and Promoters in Chicken Genome.

Valentina A Grushina, Anastasia P Filatova, Valeria S Gagarina, Danila E Prasolov, Fedor A Kolpakov, Oleg A Gusev, Sergey S Pintus

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Valentina A GrushinaDepartment of Computational Biology, Sirius University of Science and Technology, 354340 Sirius, Russia.
Anastasia P FilatovaDepartment of Genetics and Cell Biology, Tomsk State University, 634050 Tomsk, Russia.
Valeria S GagarinaDepartment of Computational Biology, Sirius University of Science and Technology, 354340 Sirius, Russia.
Danila E PrasolovDepartment of Computational Biology, Sirius University of Science and Technology, 354340 Sirius, Russia.
Fedor A KolpakovDepartment of Computational Biology, Sirius University of Science and Technology, 354340 Sirius, Russia.
Oleg A GusevRegulatory Genomics Research Center, Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Russia.ORCID 0000-0002-6203-9758
Sergey S PintusDepartment of Computational Biology, Sirius University of Science and Technology, 354340 Sirius, Russia.

Funding

Russian Science Foundation 24-24-20106
6 · The paper itself

Abstract

Gene expression from promoters is influenced by interactions with genomic enhancers located within the same topologically associating domain (TAD). Enhancer activity can be evaluated by measuring the transcriptional output of enhancer RNAs, and the CAGE methodology enables the simultaneous assessment of enhancer and promoter activities within a single experiment. In this study, we examined the correlation between gene and enhancer activities within individual TADs across multiple tissues in slow- and fast-growing chickens, and we assessed the biological significance of genes with promoters that are regulated by enhancers. Our analysis revealed a statistically significant association between gene expression levels and enhancer activity in all tissues examined. Notably, enhancer-mediated regulation appears to activate key pathways involved in transcriptional control and nucleic acid biosynthesis.

Indexed as

ChickensEnhancer Elements, GeneticGenomePromoter Regions, GeneticAnimalsGene Expression RegulationCAGEchickenenhancersgene regulationpromoters

Identifiers

PMID41373562
PMCPMC12692027

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.