Evidence map›Paper›PMID 41372802›Full record

ArticleBMC research notes2025

Precision metagenomics reveals microbial landscape in acute upper respiratory infections: a comprehensive dataset.

Sadia Almas, Rob E Carpenter, Vaibhav K Tamrakar, Anuradha Singh, Aditya Sharma, Rahul Sharma

Abstract read
In one paragraph

Article in BMC research notes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sadia Almas *Scienetix LLC, Tyler, 75703, Texas, United States.
Rob E CarpenterAdvanta Genetics Research Laboratory, 10935 CR 159, Tyler, TX, 75703, USA.
Vaibhav K Tamrakar *RetroBioTech And Research Pvt Limited, 309, kusum Vihar Jagatpura, JAIPUR, RAJ, 75019, India.
Anuradha SinghRetroBioTech And Research Pvt Limited, 309, kusum Vihar Jagatpura, JAIPUR, RAJ, 75019, India.
Aditya SharmaRetroBioTech And Research Pvt Limited, 309, kusum Vihar Jagatpura, JAIPUR, RAJ, 75019, India.
Rahul SharmaScienetix LLC, Tyler, 75703, Texas, United States. rahuldnadx@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesThe comprehension of the microbial composition in upper respiratory tract infections is pivotal for the progression of diagnostic and treatment methodologies. This article presents a dataset derived from Precision Metagenomic next-generation sequencing using hybridization capture-based targeted sequencing. Nasopharyngeal samples from 24 patients with acute URIs were analyzed using the Illumina DATA DESCRIPTION: This dataset serves as a valuable asset for future research in respiratory medicine, infectious disease epidemiology, antimicrobial resistance detection, and therapeutic interventions. Its potential for reuse and integration with other omics datasets enhances its significance. The comprehensive nature of the data facilitates research into relationships between the respiratory microbiota and host factors, including clinical outcomes, immune responses, or genetic predispositions. Moreover, the article underscores the interdisciplinary potential by advocating for the integration of this dataset with other relevant datasets such as transcriptomics or metabolomics, enabling a deeper understanding of the intricate interactions in acute upper respiratory infections. The presented dataset contributes to the expanding knowledge in precision metagenomics and holds the promise to propel research and clinical practices in the field of respiratory diseases.

Indexed as

MetagenomicsMicrobiotaRespiratory Tract InfectionsAcute DiseaseAdultFemaleHigh-Throughput Nucleotide SequencingHumansMaleMiddle AgedMicrobiomeNext generation sequencing (NGS)Precision metagenomicsRespiratory infectionsTargeted sequencing

Identifiers

PMID41372802
PMCPMC12801654

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.