Evidence map›Paper›PMID 41369293›Full record

ArticleThe ISME journal2025

Extensive halogenated organic compound reservoirs and active microbial dehalogenation in Mariana Trench sediments.

Rulong Liu, Hui Wei, Zhiao Xu, Yuheng Liu, Jiani He, Zhixuan Wang, Li Wang, Min Luo, Jiasong Fang, Federico Baltar and 3 more

Abstract read
In one paragraph

Article in The ISME journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Rulong LiuCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.ORCID 0000-0001-5198-0422
Hui WeiCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.
Zhiao XuCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.
Yuheng LiuCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.
Jiani HeCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.
Zhixuan WangCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.
Li WangCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.
Min LuoCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.
Jiasong FangCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.
Federico BaltarCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.
Yunping XuCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.
Qirui LiangCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.
Liting HuangCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.

Funding

National Natural Science Foundation of China 42276149National Natural Science Foundation of China 92251303ocean negative carbon emissions program (ONCE)Shanghai Frontiers Research Fund of the Hadal Biosphere, the deep ocean microbiome and ecosystem program (DOME)
6 · The paper itself

Abstract

The hadal trenches, the deepest regions of the ocean, serve as the final sinks for marine particles and "tunnels" for material exchange between the ocean and Earth's interior. Despite their extreme conditions, the trench sediments contain high content of organic carbon and active microbial carbon turnover, are hotspots for deep-sea organic carbon degradation and unique microbial processes. However, little is known about the organic carbon components and microbial metabolisms driving their degradation in trench sediments. This study provides the first comprehensive quantification of total halogenated organic compounds (organohalides) in Mariana Trench sediments. The measured bulk organic halogen concentrations exceeded all previously reported individual compounds by orders of magnitude, with a mean stoichiometric ratio of 1:49 (halogen:carbon) in the sedimentary organic carbon pool. These findings suggest the trench sediments may represent a significant reservoir for organohalides. Metagenomic analysis of global ocean data shows significant enrichment of the genes for organohalides biodegradation (dehalogenation) in trench microbiomes than those in other marine environments. Putative dehalogenating microorganisms in trench sediments encompassed 16 phyla and 52 orders, capable of metabolizing 18 structurally diverse organohalide compounds, revealing an unexpectedly broad phylogenetic distribution of organohalides metabolism and versatile substrate specificity among trench microbial communities. High pressure microcosm experiments demonstrated rapid degradation of typical organohalide compounds and transcription of genes related to organohalides metabolisms, confirming an active organohalides degradation by trench microorganisms. These findings underscore the role of organohalides metabolism in organic carbon remineralization in hadal trenches, advancing our understanding of deep-sea carbon cycling and microbial survival.

Indexed as

BacteriaGeologic SedimentsHydrocarbons, HalogenatedOrganic ChemicalsBiodegradation, EnvironmentalCarbonHalogenationMetagenomicsMicrobiotaCarbonHydrocarbons, HalogenatedOrganic Chemicalscarbon cyclingdehalogenationhadal trenchhalogenated organic compoundsmetabolic pathwaymicrobiome

Identifiers

PMID41369293
PMCPMC12750322

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.