Evidence map›Paper›PMID 41366289›Full record

ArticleBMC microbiology2025

Characterization and modification of phenolic acid decarboxylase from marine bacteria for the synthesis of 4-vinyl phenol derivatives.

Liying Zhang, Jihui Shen, Mingjie Ren, Yongbin Xu, Shaolong Lin, Surina Bao, Lulu Wang, Ruochen Fan, Liming Jin, Chunshan Quan

Abstract read
In one paragraph

Article in BMC microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Liying Zhang *Key Laboratory of Biotechnology and Bioresources Utilization (Ministry of Education), College of Life Science, Dalian Minzu University, Dalian, China.
Jihui Shen *Key Laboratory of Biotechnology and Bioresources Utilization (Ministry of Education), College of Life Science, Dalian Minzu University, Dalian, China.
Mingjie RenKey Laboratory of Biotechnology and Bioresources Utilization (Ministry of Education), College of Life Science, Dalian Minzu University, Dalian, China.
Yongbin XuKey Laboratory of Biotechnology and Bioresources Utilization (Ministry of Education), College of Life Science, Dalian Minzu University, Dalian, China.
Shaolong LinKey Laboratory of Biotechnology and Bioresources Utilization (Ministry of Education), College of Life Science, Dalian Minzu University, Dalian, China.
Surina BaoKey Laboratory of Biotechnology and Bioresources Utilization (Ministry of Education), College of Life Science, Dalian Minzu University, Dalian, China.
Lulu WangKey Laboratory of Biotechnology and Bioresources Utilization (Ministry of Education), College of Life Science, Dalian Minzu University, Dalian, China.
Ruochen FanKey Laboratory of Biotechnology and Bioresources Utilization (Ministry of Education), College of Life Science, Dalian Minzu University, Dalian, China.
Liming JinKey Laboratory of Biotechnology and Bioresources Utilization (Ministry of Education), College of Life Science, Dalian Minzu University, Dalian, China. jlm@dlnu.edu.cn.
Chunshan QuanKey Laboratory of Biotechnology and Bioresources Utilization (Ministry of Education), College of Life Science, Dalian Minzu University, Dalian, China. mikyeken@dlnu.edu.cn.

Funding

Applied Basic Research Project of Liaoning Provincial Science and Technology Department 2022020332-JH2/1013Basic scientific research projects of Liaoning Provincial Department of Education LJKMZ20220401National College Students Innovation and Entrepreneurship Training Program 202212026013the key lab of marine bioactive substance and modern analytical technique, SOA MBSMAT-2019-05
6 · The paper itself

Abstract

backgroundThe 4-vinyl derivatives of various hydroxycinnamic acids are highly valued for their substantial application in the food and other industries. With growing demand for natural spice flavors, the nonoxidative decarboxylation of phenolic acid decarboxylase has attracted significant attention as a method for biosynthesizing 4-vinyl derivatives. This approach offers several advantages, such as mild reaction conditions, excellent substrate affinity, and high reaction efficiency.

resultsIn this study, we successfully screened a new strain, Bacillus sp. QCS58, from among 40 marine bacteria for the first time. This strain harbors the phenolic acid decarboxylase gene. Subsequently, we cloned and overexpressed the phenolic acid decarboxylase BaPAD-Q58 from strain QCS58 in Escherichia coli. Enzymatic property assays revealed that BaPAD-Q58 exhibited enhanced stability in organic solvents and displayed optimal catalytic activity at pH 6.0 and 35 °C. To improve the substrate affinity of BaPAD-Q58, we conducted tertiary structure prediction and molecular docking analysis to guide site-directed mutagenesis. Importantly, site-directed mutagenesis significantly improved the binding affinity between the phenolic acid decarboxylase and its substrate, as evidenced by a Km value of 0.51 ± 0.14 mM for the variant BaPAD-Q58

conclusionThe mutant BsPAD-Q58

Indexed as

BacillusCarboxy-LyasesPhenolsAquatic OrganismsBacterial ProteinsCloning, MolecularCoumaric AcidsEscherichia coliHydrogen-Ion ConcentrationKineticsMolecular Docking SimulationMutagenesis, Site-DirectedSubstrate Specificity4-vinylphenolBacterial ProteinsCarboxy-LyasesCoumaric Acidsphenolic acid decarboxylasePhenols4-vinyl derivatives; marine bacteriaBioconversionHydroxycinnamic acidsPhenolic acid decarboxylase

Identifiers

PMID41366289
PMCPMC12817654

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.