Evidence map›Paper›PMID 41365917›Full record

ArticleNPJ biofilms and microbiomes2025

Longitudinal study of the udder microbiome using genome-centric metagenomics uncovers pathogen-driven adaptation and succession.

Vinicius da Silva Duarte, Fiona Valerie Franklin, Alicja Krysmann, Davide Porcellato

Abstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Vinicius da Silva DuarteFaculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences (NMBU), Ås, Norway. v.d.s.duarte@ous-research.no.
Fiona Valerie FranklinFaculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences (NMBU), Ås, Norway.
Alicja KrysmannFaculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences (NMBU), Ås, Norway.
Davide PorcellatoFaculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences (NMBU), Ås, Norway.

Funding

Norges Forskningsråd 314733
6 · The paper itself

Abstract

Bovine mastitis remains a major disease affecting dairy herds globally due to its complex and multi-etiological nature. To address gaps in microbial and immunological understanding, this longitudinal study examined the udder microbiome across lactation in 24 Norwegian Red cows. Somatic cell count (SCC) and microbiota composition varied by lactation stage, with low SCC ( < 100,000 cells/mL) more frequent in early (80%) and middle (78.9%) than late lactation (53%) and dry-off (53.1%). Microbial diversity was shaped by SCC, lactation stage, and individual variability. Temporal profiling identified persistent infections involving Staphylococcus aureus and Staphylococcus chromogenes, while samples with low SCC were enriched in beneficial genera including Corynebacterium, Bradyrhizobium, and Lactococcus. Shotgun metagenomics revealed pathogen-specific metabolic traits, and genome-centric analysis recovered 142 MAGs characterized via sequence typing, virulence, and resistance profiling. These findings offer valuable insights into microbial adaptation and succession, informing strategies to better manage and prevent mastitis.

Indexed as

BacteriaMammary Glands, AnimalMastitis, BovineMetagenomicsMicrobiotaAnimalsCattleFemaleGenome, BacterialLactationLongitudinal StudiesRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID41365917
PMCPMC12689607

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.