Evidence map›Paper›PMID 41365878›Full record

ArticleNature communications2025

PP-GWAS: Privacy Preserving Multi-Site Genome-wide Association Studies.

Arjhun Swaminathan, Anika Hannemann, Ali Burak Ünal, Nico Pfeifer, Mete Akgün

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Arjhun SwaminathanMedical Data Privacy and Privacy-preserving Machine Learning (MDPPML), University of Tübingen, Tübingen, Germany. arjhun.swaminathan@uni-tuebingen.de.ORCID http://orcid.org/0009-0004-3223-4538
Anika HannemannDept. of Computer Science, Leipzig University, Leipzig, Germany.
Ali Burak ÜnalMedical Data Privacy and Privacy-preserving Machine Learning (MDPPML), University of Tübingen, Tübingen, Germany.
Nico PfeiferInstitute for Bioinformatics and Medical Informatics (IBMI), University of Tübingen, Tübingen, Germany.
Mete AkgünMedical Data Privacy and Privacy-preserving Machine Learning (MDPPML), University of Tübingen, Tübingen, Germany. mete.akguen@uni-tuebingen.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome-wide association studies help uncover genetic influences on complex traits and diseases. Importantly, multi-site data collaborations enhance the statistical power of these studies but pose challenges due to the sensitivity of genomic data. Existing privacy-preserving approaches to performing multi-site genome-wide association studies rely on computationally expensive cryptographic techniques, which limit applicability. To address this, we present PP-GWAS, a privacy-preserving algorithm that improves efficiency and scalability while maintaining data privacy. Our method leverages randomized encoding within a distributed framework to perform stacked ridge regression on a linear mixed model, enabling robust analysis of quantitative phenotypes. We show experimentally using real-world and synthetic data that our approach achieves twice the computational speed of comparable methods while reducing resource consumption.

Indexed as

Genetic PrivacyGenome-Wide Association StudyAlgorithmsHumansPhenotype

Identifiers

PMID41365878
PMCPMC12695980

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.