Evidence map›Paper›PMID 41361395›Full record

ArticleBMC genomic data2025

The first draft genome sequence of Penicillium adametzioides FBCC-F1417, isolated from freshwater plant litter in South Korea.

Yoeguang Hue, Yebin Nam, Jaeduk Goh, Ki-Tae Kim

Abstract read
In one paragraph

Article in BMC genomic data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yoeguang HueDepartment of Plant Medicine, Sunchon National University, Suncheon, Republic of Korea.
Yebin NamDepartment of Plant Medicine, Sunchon National University, Suncheon, Republic of Korea.
Jaeduk GohProkaryote Research Division, Nakdonggang National Institute of Biological Resources, Sangju, Republic of Korea. jdgoh@nnibr.re.kr.
Ki-Tae KimDepartment of Plant Medicine, Sunchon National University, Suncheon, Republic of Korea. kitaekim@scnu.ac.kr.

Funding

Korea Ministry of Environment (MOE) 2021003420003
6 · The paper itself

Abstract

objectivesPenicillium adametzioides is a phylogenetically distinct and ecologically adaptable member of the genus Penicillium. Reports from different isolates and contexts describe postharvest pathogenicity, biocontrol potential, and production of marine-derived metabolites. Because these roles come from different strains and environments, species-level generalizations remain uncertain. To address the lack of genomic data while avoiding overgeneralization, we sequenced and annotated P. adametzioides FBCC-F1417, a freshwater plant-litter isolate from Korea, to provide a strain-resolved genomic resource that supports comparative and pangenomic studies across P. adametzioides and related taxa. DATA DESCRIPTION: We assembled the genome of P. adametzioides FBCC-F1417 into 12 contigs totaling 40.47 Mb, with an N50 of 5.16 Mb and GC content of 45.52%. BUSCO analysis showed 99.2% completeness, indicating a high-quality assembly. Gene prediction identified 13,643 protein-coding genes, of which 5,959 proteins (40.7%) were functionally annotated. Repeat analysis showed that 6.62% genome consisted of repetitive elements. Secondary metabolite analysis predicted 86 biosynthetic gene clusters, including NRPS, PKS, terpene, and hybrid types. These features should be interpreted as attributes of FBCC-F1417 rather than definitive species-wide characteristics, and the annotated genome is intended as a reference for downstream comparative and pangenomic analyses that will test which features are conserved across P. adametzioides.

Indexed as

Fresh WaterGenome, FungalPenicilliumRepublic of KoreaBiocontrol agentFresh water fungusGenomePenicillium adametzioidesSecondary metabolite

Identifiers

PMID41361395
PMCPMC12683879

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.