Evidence map›Paper›PMID 41359682›Full record

ArticlePLoS computational biology2025

Learning structured population models from data with WSINDy.

Rainey Lyons, Vanja Dukic, David M Bortz

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Exploring memory effects: Sparse identification in vector-borne diseases.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Dynamic Temporal Modeling of Abdominal Aortic Aneurysm Morphology with Z-SINDy.medRxiv : the preprint server for health sciences · 2026
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Rainey LyonsDepartment of Applied Mathematics, University of Colorado, Boulder, Colorado, United States of America.ORCID 0000-0003-4113-0357
Vanja DukicDepartment of Applied Mathematics, University of Colorado, Boulder, Colorado, United States of America.
David M BortzDepartment of Applied Mathematics, University of Colorado, Boulder, Colorado, United States of America.

Funding

Data-driven and science-informed methods for the discovery of biomedical mechanisms and processesR35GM149335 · NIGMS · UNIVERSITY OF COLORADO · PI David Bortz · 2023 to 2026
$1.7M
NIGMS NIH HHS R35 GM149335
6 · The paper itself

Abstract

Characteristics of individuals in a population, such as age and size, play a key role in determining how populations change over time. In contexts of population dynamics, identifying effective model features, such as fecundity and mortality rates, is generally a complex and computationally intensive process, especially when the dynamics are heterogeneous across the population. In this work, we propose a Weak form Scientific Machine Learning-based method for selecting appropriate model ingredients from a library of scientifically feasible functions used to model structured populations. This paper presents extensions of the Weak form Sparse Identification of Nonlinear Dynamics (WSINDy) method to select the best-fitting ingredients from noisy time-series histogram data. This extension includes learning heterogeneous dynamics and also learning the boundary processes (such as birth) of the model directly from the data. We additionally incorporate a cross-validation method which helps fine tune the recovered boundary process hyperparameters to the data. Several test cases are considered, demonstrating the method's performance for several standard models from population modeling, including age and size-structured models. Through these examples, we examine both the advantages and limitations of the method, with a particular focus on the distinguishability of terms in the library.

Indexed as

Machine LearningModels, BiologicalNonlinear DynamicsPopulation DynamicsAlgorithmsComputational BiologyComputer SimulationHumans

Identifiers

PMID41359682
PMCPMC12685223

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.