Evidence map›Paper›PMID 41357776›Full record

ArticleJournal of applied glycoscience2025

Identity of Carbohydrate-Responsive Genes in a Cultured Microbial Community Using Metagenomic and Metatranscriptomic Approaches.

Naru Yoshino, Kaoru Matsumoto, Masakazu Ishikawa, Juno Nishio, Tomohiko Matsuzawa

Abstract read
In one paragraph

Article in Journal of applied glycoscience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Naru Yoshino1 Department of Applied Biological Science, Faculty of Agriculture, Kagawa University.
Kaoru Matsumoto2 Bioinformatics Analysis Center, Kagawa University.
Masakazu Ishikawa2 Bioinformatics Analysis Center, Kagawa University.
Juno Nishio1 Department of Applied Biological Science, Faculty of Agriculture, Kagawa University.
Tomohiko Matsuzawa1 Department of Applied Biological Science, Faculty of Agriculture, Kagawa University.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Metagenomics can be used to obtain sequence information on putative genes in a microbial community. However, it is difficult to identify genes with specific functions among the numerous predicted genes. In this study, we attempted to identify genes induced in cultured microbes by the addition of saccharides using metagenomic and metatranscriptomic analyses. A mixture of arabinoxylan and its derived oligosaccharides was used as the inducer in this study. Some genes were highly induced in the presence of additive saccharides and formed gene clusters for the utilization of additive saccharides, suggesting that metatranscriptomic and metagenomic analyses are useful for analyzing carbohydrate-responsive genes in microbial communities and screening novel carbohydrate-active enzymes.

Indexed as

environmental microbeglycoside hydrolasemetagenomemetatranscriptomeoligosaccharidepolysaccharide

Identifiers

PMID41357776
PMCPMC12678896

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.