Evidence map›Paper›PMID 41357561›Full record

ArticleSmart medicine2025

Integrating Single-Cell and Spatial Transcriptomics Reveals NK Cell Subpopulations Associated With Immunotherapy for Melanoma.

Zhicheng Hu, Yongfei Chen, Hao Yang, Qiuming Pan, Hongrui Li, Shuting Li, Junxi Wang, Yudi Huang, Guanglong Huang, Shanqiang Qu

Abstract read
In one paragraph

Article in Smart medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Microneedle-Assisted Cell Delivery and Therapy.Research (Washington, D.C.) · 2026
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Zhicheng HuDepartment of Burn Surgery The First Affiliated Hospital of Sun Yat-sen University Guangzhou China.ORCID https://orcid.org/0000-0002-0026-0676
Yongfei ChenDepartment of Burn Surgery The First Affiliated Hospital of Sun Yat-sen University Guangzhou China.
Hao YangDepartment of Burn Surgery The First Affiliated Hospital of Sun Yat-sen University Guangzhou China.ORCID https://orcid.org/0000-0002-5388-5039
Qiuming PanDepartment of Neurosurgery Nanfang Hospital Southern Medical University Guangzhou China.ORCID https://orcid.org/0009-0001-6629-3657
Hongrui LiDepartment of Neurosurgery Nanfang Hospital Southern Medical University Guangzhou China.
Shuting LiDepartment of Burn Surgery The First Affiliated Hospital of Sun Yat-sen University Guangzhou China.
Junxi WangDepartment of Neurosurgery Nanfang Hospital Southern Medical University Guangzhou China.
Yudi HuangDepartment of Neurosurgery Nanfang Hospital Southern Medical University Guangzhou China.
Guanglong HuangDepartment of Neurosurgery Nanfang Hospital Southern Medical University Guangzhou China.ORCID https://orcid.org/0000-0002-1589-9202
Shanqiang QuDepartment of Neurosurgery Nanfang Hospital Southern Medical University Guangzhou China.ORCID https://orcid.org/0000-0002-2709-0101

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Immune checkpoint inhibitors (ICI) have demonstrated prolonged efficacy in certain melanoma patients, yet a significant portion of patients do not experience clinical improvement, with the mechanisms underlying this resistance still not fully understood. Using established cell markers, we partitioned the single-cell transcriptome into clusters, finding a notable link between NK cells and patient response to immunotherapy. We further identified four distinct subpopulations of NK cells, profiling marker gene sets and unique biological functions associated with each subpopulation. This analysis provides insights into the trajectory of NK cell development and differentiation, along with identifying the transcription factors driving these processes. The study pinpointed NK cluster 01 as pivotal in influencing patient sensitivity and prognosis during immunotherapy. Single-cell transcriptome and spatial transcriptomics (ST) analysis revealed the proximity of NK cluster 01 cells to melanoma cells, hinting at a potential regulation of cell-cell interaction via the IFN-II signaling pathway network. ST analysis revealed the spatial arrangement and interaction of NK cluster 01 cells with melanoma cells. This study explores the feasibility of targeting NK cluster 01 cells with small molecule drugs via molecular docking, offering a promising approach to bolster the clinical utility of NK cell therapy. We comprehensively analyze the heterogeneity of NK cells within melanoma, elucidate the potential regulatory interactions between NK cells and other microenvironmental components, and establish a basis for the future clinical utilization of distinct NK cell subsets as therapeutic targets.

Indexed as

biomarkerimmunotherapyNK cellssingle‐cell sequencingspatial transcriptome sequencing

Identifiers

PMID41357561
PMCPMC12677594

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.