Evidence map›Paper›PMID 41355892›Full record

ArticleFrontiers in bioinformatics2025

inDAGO: a user-friendly interface for seamless dual and bulk RNA-Seq analysis.

Gaetano Aufiero, Carmine Fruggiero, Nunzio D'Agostino

Abstract read
In one paragraph

Article in Frontiers in bioinformatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Gaetano Aufiero *Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy.
Carmine Fruggiero *Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy.
Nunzio D'AgostinoDepartment of Agricultural Sciences, University of Naples Federico II, Portici, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dual RNA-sequencing enables simultaneous profiling of protein-coding and non-coding transcripts from two interacting organisms, an essential capability when physical separation is difficult, such as in host-parasite or cross-kingdom interactions (e.g., plant-plant or host-pathogen systems). By allowing

Indexed as

cross-species RNA-seqdifferentially expressed genesgene expression profilinggraphical user interface (GUI)R-shiny frameworktranscriptomic dynamics

Identifiers

PMID41355892
PMCPMC12678335

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.