Evidence map›Paper›PMID 41354730›Full record

ArticleNature communications2025

Pre-existing and early cellular immune factors correlate with functionally complete protection against primary controlled human SARS-CoV-2 infection.

Helen R Wagstaffe, Ryan S Thwaites, Jasmin K Sidhu, Rik G H Lindeboom, Lorenz Kretschmer, Kaylee B Worlock, Lisa M Dratva, Ao Huang, Stephanie Ascough, Loukas Papargyris and 16 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Helen R WagstaffeDepartment of Infectious Disease, Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-4462-7484
Ryan S ThwaitesNational Heart and Lung Institute, Imperial College London, London, UK.ORCID http://orcid.org/0000-0003-3052-2793
Jasmin K SidhuNational Heart and Lung Institute, Imperial College London, London, UK.
Rik G H LindeboomWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID http://orcid.org/0000-0002-3660-504X
Lorenz KretschmerWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.
Kaylee B WorlockUCL Respiratory, Division of Medicine, University College London, London, UK.ORCID http://orcid.org/0000-0002-5656-7634
Lisa M DratvaWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID http://orcid.org/0000-0002-2873-6787
Ao HuangCenter for Systems and Engineering Immunology (CSEI) and Department of Immunobiology, Yale University, New Haven, CT, USA.
Stephanie AscoughDepartment of Infectious Disease, Imperial College London, London, UK.
Loukas PapargyrisDepartment of Infectious Disease, Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-5803-5826
Richard McKendryDepartment of Infectious Disease, Imperial College London, London, UK.
Ashley M CollinsDepartment of Infectious Disease, Imperial College London, London, UK.ORCID http://orcid.org/0009-0006-1205-4366
Jiayun XuDepartment of Infectious Disease, Imperial College London, London, UK.
Nana-Marie LemmDepartment of Infectious Disease, Imperial College London, London, UK.
Ben KillingleyDepartment of Infectious Diseases, University College London Hospital, London, UK.
Mariya KalinovahVIVO Services Ltd., London, UK.
Alex MannhVIVO Services Ltd., London, UK.ORCID http://orcid.org/0000-0002-3744-4604
Andrew CatchpolehVIVO Services Ltd., London, UK.ORCID http://orcid.org/0000-0003-1795-1008
Leo SwadlingDivision of Infection and Immunity, University College London, London, UK.ORCID http://orcid.org/0000-0002-0537-6715
John S TsangCenter for Systems and Engineering Immunology (CSEI) and Department of Immunobiology, Yale University, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-3186-3047
Mala K MainiDivision of Infection and Immunity, University College London, London, UK.ORCID http://orcid.org/0000-0001-6384-1462
Mahdad NoursadeghiDivision of Infection and Immunity, University College London, London, UK.ORCID http://orcid.org/0000-0002-4774-0853
Marko Z NikolićUCL Respiratory, Division of Medicine, University College London, London, UK.ORCID http://orcid.org/0000-0001-6304-6848
Sarah A TeichmannThe Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID http://orcid.org/0000-0002-6294-6366
Peter J M OpenshawNational Heart and Lung Institute, Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-7220-2555
Christopher ChiuDepartment of Infectious Disease, Imperial College London, London, UK. c.chiu@imperial.ac.uk.ORCID http://orcid.org/0000-0003-0914-920X

Funding

Transferred ImmunityU19AI145825 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI PASETTI, MARCELA F · 2021 to 2025
$16.0M
Drivers of individual variation in influenza vaccine response and protection from infectionR01AI170116 · NIAID · UNIVERSITY OF CHICAGO · PI Sarah Cobey, John S Tsang · 2022 to 2026
$7.2M
The "Dynamics of the immune responses to repeat influenza vaccination exposures" (DRIVE) StudyU01AI153700 · NIAID · UNIVERSITY OF CHICAGO · PI COBEY, SARAH, COWLING, BENJAMIN JOHN · 2020 to 2024
$6.2M
Baseline host and environmental factors that impact pre-erythrocytic malaria vaccine (hypo)responsiveness in endemic regionsU01AI165745 · NIAID · LEIDEN UNIVERSITY MEDICAL CENTER · PI Maria Yazdanbakhsh · 2022 to 2026
$3.3M
NIAID NIH HHS R01 AI170116NIAID NIH HHS U01 AI153700NIAID NIH HHS U01 AI165745NIAID NIH HHS U19 AI145825Wellcome TrustWellcome Trust (Wellcome) 224530/z/21/z
6 · The paper itself

Abstract

Identifying host factors that mediate protection against newly-emergent viruses is needed for improved pandemic preparedness. Here, we analysed pre- and early post-exposure immune factors associated with resisting SARS-CoV-2 infection after human challenge in seronegative individuals, using multiplex protein, cytometric and RNA sequencing approaches in the nasopharynx and circulation. Pre-existing cross-reactive antibodies correlate poorly with clinical outcome. Instead, protection is associated with heightened nasopharyngeal CCL13 levels locally produced by conventional dendritic cells and monocytes, along with cross-reactive T cells and less differentiated NK cells. Conditional independence network analysis implicates nasal CCL13 as the central node connected to pre-existing non-structural protein-specific T cells by CD1c

Indexed as

COVID-19SARS-CoV-2AdultAntibodies, ViralCross ReactionsDendritic CellsFemaleHumansKiller Cells, NaturalMaleMiddle AgedMonocytesNasopharynxT-LymphocytesAntibodies, Viral

Identifiers

PMID41354730
PMCPMC12789448

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.