ArticleBMC genomic data2025
Draft genomes of two Streptococcus agalactiae from bovine mastitis in the North-West Province, South Africa.
Article in BMC genomic data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.
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Who cites it
2 citing papers in PubMed.
- Genomic characterization of Pseudomonas aeruginosa clonal lineage ST162 isolated from bovine-milk in South Africa.BMC microbiology · 2026Article
- Draft genomes of two Streptococcus agalactiae from bovine mastitis in the North-West Province, South Africa.BMC genomic data · 2025Article
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Authors and funding
3 authors.
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Abstract
objectivesThis study presents the whole-genome sequence of Streptococcus agalactiae 40LHNT and 10RH2NT, isolated from bovine milk with subclinical mastitis in the North-West Province of South Africa. The objective was to characterize the genomes to understand the antibiotic resistance and virulent potential of the isolates. DATA DESCRIPTION: Genomic DNA of S. agalactiae strains was extracted and sequenced using the Oxford Nanopore MiniON platform. De novo assembly was carried out using Flye v. v2.9, resulting in an average draft genome size of 2.25 Mb for both strains, assembled into 4 contigs for strain 40LHNT and 91 contigs for strain 10RH2NT with an average GC content of 35.5% for both strains. Genome quality assessment revealed an average completeness of 92.64% and a contamination level of 1.6%. For both strains, the closest reference type strain was S. agalactiae NCTC8181 (accession GCA_900458965.1), showing an average nucleotide identity of 97%, thereby confirming species-level identity and close genetic relatedness. Annotation using the NCBI Prokaryotic Genome Annotation Pipeline identified 2,067 and 1977 protein-coding genes for strains 40LHNT and 10RH2NT, respectively..
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