Evidence map›Paper›PMID 41353342›Full record

ArticleNature communications2025

Versatile molecular tools enabling customizable DNA methylation editing in Arabidopsis.

Li He, Yao Yao, Yin You, Xiaofei Wei, Yu Ma, Wei Yuan, Zhaobo Lang, Jian-Kang Zhu

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Li He *Shanghai Center for Plant Stress Biology, Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China. li.he@tuebingen.mpg.de.ORCID 0000-0001-8289-4076
Yao Yao *Shanghai Center for Plant Stress Biology, Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China.
Yin YouShanghai Center for Plant Stress Biology, Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China.
Xiaofei WeiInstitute of Advanced Biotechnology and School of Medicine, Southern University of Science and Technology, Shenzhen, China.
Yu MaInstitute of Advanced Biotechnology and School of Medicine, Southern University of Science and Technology, Shenzhen, China.ORCID 0009-0008-4395-1240
Wei YuanDepartment of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany.
Zhaobo LangInstitute of Advanced Biotechnology and School of Medicine, Southern University of Science and Technology, Shenzhen, China. langzb@sustech.edu.cn.ORCID 0000-0002-5551-0126
Jian-Kang ZhuInstitute of Advanced Biotechnology and School of Medicine, Southern University of Science and Technology, Shenzhen, China. zhujk@sustech.edu.cn.ORCID 0000-0001-5134-731X

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32100458National Natural Science Foundation of China (National Science Foundation of China) 32188102
6 · The paper itself

Abstract

Tools to edit DNA methylation in a targeted manner are vital for establishing causal relationships between DNA methylation and its function, as well as for plant breeding and gene therapy. Here, by constructing dCas9 fusions to a panel of effectors and cofactors, we develop a range of highly effective tools for editing DNA methylation in Arabidopsis, including five tools for DNA methylation and six tools for DNA demethylation. Our tools show a diversity of performance features in terms of specificity and efficiency, offering either the capacity to edit DNA methylation in a target-specific manner or the ability to edit DNA methylation genome-wide due to potent off-target effect. Importantly, DNA methylation edited by these tools is inherited in the absence of transgene. These versatile tools pave the way for diverse applications of DNA methylation editing in not only research but also epigenetic breeding of crops.

Indexed as

ArabidopsisDNA MethylationGene EditingCRISPR-Cas SystemsGenome, PlantPlants, Genetically Modified

Identifiers

PMID41353342
PMCPMC12783717

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.