Evidence map›Paper›PMID 41353315›Full record

ArticleBMC plant biology2025

SiLRL1, a bHLH transcription factor from foxtail millet, promotes carotenoid accumulation and improves drought tolerance.

Yiqiong Huo, Mengdi Wang, Xin Wan, Yiru Zhao, Huarui Han, Bin Zhang, Siyu Hou, Xuemei Ren, Jiayu Song, Yuanhuai Han

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yiqiong HuoShanxi Hou Ji Laboratory, College of Agriculture, Shanxi Agricultural University, Jinzhong, Shanxi, 030801, China.
Mengdi WangShanxi Hou Ji Laboratory, College of Agriculture, Shanxi Agricultural University, Jinzhong, Shanxi, 030801, China.
Xin WanShanxi Hou Ji Laboratory, College of Agriculture, Shanxi Agricultural University, Jinzhong, Shanxi, 030801, China.
Yiru ZhaoShanxi Hou Ji Laboratory, College of Agriculture, Shanxi Agricultural University, Jinzhong, Shanxi, 030801, China.
Huarui HanShanxi Hou Ji Laboratory, College of Agriculture, Shanxi Agricultural University, Jinzhong, Shanxi, 030801, China.
Bin ZhangShanxi Hou Ji Laboratory, College of Agriculture, Shanxi Agricultural University, Jinzhong, Shanxi, 030801, China.
Siyu HouShanxi Hou Ji Laboratory, College of Agriculture, Shanxi Agricultural University, Jinzhong, Shanxi, 030801, China.
Xuemei RenShanxi Hou Ji Laboratory, College of Life Sciences, Shanxi Agricultural University, Jinzhong, Shanxi, 030801, China.
Jiayu SongInstitute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China. songjy@zaas.ac.cn.
Yuanhuai HanShanxi Hou Ji Laboratory, College of Agriculture, Shanxi Agricultural University, Jinzhong, Shanxi, 030801, China. hanyuanhuai@sxau.edu.cn.

Funding

NSFC 32241038Shanxi Houji Laboratory 202404010930003-J28Shanxi Provincial Key Research and Development Program 2022ZDYF108The Grand Science and Technology Special Project in Shanxi Province 202101140601027The Natural Science Foundation of Zhejiang Province LQ23SC130006The Scientific and Technological Innovation Programs of Shanxi Agricultural University 2018YJ32
6 · The paper itself

Abstract

Foxtail millet, an ancient cereal crop domesticated in China, is valued for its nutritional richness, particularly its carotenoid content. Carotenoids play critical roles in plant development and stress responses, and their metabolic pathways are regulated by various transcription factors (TFs). However, the transcriptional regulatory mechanisms controlling carotenoid accumulation in cereal crops remain poorly understood. In this study, we characterized SiLRL1, a basic helix-loop-helix (bHLH) TF in foxtail millet, and investigated its role in carotenoid metabolism and abiotic stress tolerance. Phylogenetic analysis classified SiLRL1 into subfamily XI of the bHLH family, which lacks a DNA-binding basic region but retains the HLH dimerization domain. Heterologous expression of SiLRL1 in Arabidopsis thaliana significantly enhanced carotenoid accumulation, particularly violaxanthin, and increased abscisic acid (ABA) levels. RNA-seq analysis revealed that SiLRL1 overexpression downregulated key carotenoid degradation genes (e.g., AtNCED4/CCD4) and upregulated genes involved in the mevalonate (MVA) and methylerythritol phosphate (MEP) pathways, as well as carotenogenic genes (e.g., AtPSY, AtLCYB, AtLCYE). Additionally, SiLRL1 overexpression improved drought tolerance and ABA sensitivity in transgenic Arabidopsis, accompanied by altered expression of ABA-responsive and drought-responsive genes. These findings establish SiLRL1 as a positive regulator of carotenoid biosynthesis and drought tolerance, providing insights into the genetic control of carotenoid metabolism and stress adaptation in foxtail millet.

Indexed as

Basic Helix-Loop-Helix ProteinsCarotenoidsPlant ProteinsSetaria PlantArabidopsisDrought ResistanceDroughtsGene Expression Regulation, PlantPhylogenyPlants, Genetically ModifiedStress, PhysiologicalBasic Helix-Loop-Helix ProteinsCarotenoidsPlant ProteinsABACarotenoidDrought toleranceFoxtail milletSiLRL1Transcriptome

Identifiers

PMID41353315
PMCPMC12797406

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.