Evidence map›Paper›PMID 41353186›Full record

ArticleBioData mining2025

Clinically aligned multi-modal image-text model for pan-cancer prognosis prediction.

Jonghyun Lee, Jacob S Leiby, Lina Takemaru, Yidi Huang, Myung-Giun Noh, Jaesik Kim, Byonghan Lee, Mattew E Lee, Derek A Oldridge, Young-Gyu Eun and 3 more

Abstract read
In one paragraph

Article in BioData mining, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Jonghyun LeeDepartment of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Jacob S LeibyDepartment of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Lina TakemaruDepartment of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Yidi HuangDepartment of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Myung-Giun NohDepartment of Pathology, Ajou University School of Medicine, Suwon, Gyeonggi-do, Republic of Korea.
Jaesik KimDepartment of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Byonghan LeeDepartment of Artificial Intelligence, Ajou University, Suwon, Gyeonggi-do, Republic of Korea.
Mattew E LeeDepartment of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Derek A OldridgeGenomics and Computational Biology Graduate Group, University of Pennsylvania, Philadelphia, PA, USA.
Young-Gyu EunDepartment of Otolaryngology-Head and Neck Surgery, Kyung Hee University Medical Center, College of Medicine Kyung Hee University, Seoul, Republic of Korea.
Hyun Jee LeeDepartment of Otolaryngology-Head and Neck Surgery, Kyung Hee University Medical Center, College of Medicine Kyung Hee University, Seoul, Republic of Korea.
Young Chan LeeDepartment of Otolaryngology-Head and Neck Surgery, Kyung Hee University Hospital at Gangdong, Kyung Hee University School of Medicine, Seoul, Republic of Korea. medchan@khu.ac.kr.
Dokyoon KimDepartment of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. dokyoon.kim@pennmedicine.upenn.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cancer prognosis prediction increasingly leverages multi-modal learning, yet existing approaches often rely on omics data that are costly and difficult to collect in routine practice. Pathology reports, by contrast, are routinely generated and widely available, providing a practical textual modality complementary to histology. We present CALM (Clinical Anchor text guided Learning for Multi-modal prognosis prediction), a general framework that integrates pathology images and reports through risk-specific anchor texts. CALM systematically incorporates prior clinical knowledge by guiding image and text alignment with large language model–derived anchors, further refined via few-shot tuning. Across 14 TCGA cancer types, CALM improved prognostic accuracy compared to image and text baselines (up to +11.5% mean C-index), with enhanced training stability. CALM achieved performance comparable to image–omics integration in PORPOISE (0.652 vs. 0.644), highlighting the prognostic value of text. External validation in an independent head and neck cancer cohort demonstrated that CALM improved generalization in zero-shot settings. Attention-based interpretation further confirmed that CALM aligns diagnostic text with tumor regions. Together, CALM offers a simple, interpretable, and clinically viable strategy for prognosis prediction, expanding the role of routine pathology reports as scalable priors in multi-modal oncology AI.

Indexed as

Clinically alignedComputational pathologyMulti-modality integrationText anchoringVision language modeling

Identifiers

PMID41353186
PMCPMC12781818

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.