ArticleThe journal of physical chemistry. B2025
Following Flavin's Vibrational Modes to Probe Anharmonicities and Low-Lying Conical Intersections.
Article in The journal of physical chemistry. B, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
3 citing papers in PubMed.
- QM/MM Calculated Triplet-Singlet Infrared Difference Spectra of LOV2 Photoreceptor Domains and FMN in Solution.ACS omega · 2026Article
- Direct Observation of Franck-Condon Stimulated Emission and Sub-20 fs Relaxation in Photoexcited Flavins.The journal of physical chemistry letters · 2026Article
- Protein Electrostatics Tune the Singlet-Triplet Energy Gap in Natural and Engineered Phototropin Light-Oxygen-Voltage (LOV) Domains.Journal of the American Chemical Society · 2026Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Flavins (e.g., riboflavin, FMN, and FAD) are biologically ubiquitous molecules widely studied using spectroscopic techniques such as ultraviolet-visible (UV/vis), Fourier-transform infrared (FTIR), and Raman spectroscopies. Those spectroscopic methods typically involve the excitation of flavin's vibrational modes either on the ground or excited state potential energy surfaces. In the case of UV/vis spectroscopy, this vibrational excitation is coupled to an electronic excitation and leads to a Franck-Condon progression that gives flavin its UV/vis absorption profile. To support experimental spectroscopy measurements, it is desirable to use computations that can accurately predict the vibrational frequencies for flavin's ground and excited electronic states. However, commonly used computational approaches often rely on a harmonic approximation, which may lead to errors for modes that are not harmonic. By using time-dependent density functional theory (TD-DFT) on lumiflavin, a simplified model system to represent flavins, we mapped the ground- and excited-state potential energy surfaces computed along 3N-6 vibrational modes near the ground equilibrium structure and computed the corresponding excited-state energies along those modes. We fitted these computed potentials with second-order polynomials and used goodness-of-fit statistics as indicators of the harmonicity of vibrational modes. Among the modes that display anharmonic behavior, several are Franck-Condon active modes, which can help explain why flavin's vertical excitation energies reported in the literature do not typically match well with the experimental wavelength of maximum absorption (λ
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.