Evidence map›Paper›PMID 41351198›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2026

Evolved DNAzymes and Stable Activation Chemistry Enable High-Efficiency DNA Ligation.

Connor Nurmi, Gemma Mendonsa, Mengdi Bao, Yingfu Li

Abstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Connor NurmiDepartment of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario, Canada.
Gemma MendonsaSeagate Research Group, Seagate Technology, Shakopee, USA.
Mengdi BaoSeagate Research Group, Seagate Technology, Shakopee, USA.
Yingfu LiDepartment of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario, Canada.ORCID https://orcid.org/0000-0002-7533-6743

Funding

Seagate Technology LLC 600018313
6 · The paper itself

Abstract

DNA ligation is a fundamental reaction used in a variety of applications, typically performed by T4 DNA ligase. For certain applications, such as DNA data storage, DNA-ligating DNAzymes offer a more stable and cost-effective alternative to protein enzymes. The E47 DNAzyme is among the most efficient DNA-ligating DNAzymes reported, but it still lacks sufficient activity for widespread adoption and requires a highly unstable phosphoimidazole-activated DNA substrate to function. In this study, we performed in vitro selection using a pre-structured library based on E47 and identified sequences with more than a twofold increase in ligation activity, representing the fastest DNA-ligating DNAzymes reported to date. We also screened alternative imidazolide compounds for substrate activation and found that phosphobenzimidazole-activated DNA substrates are significantly more stable, remaining intact for at least 24 h at room temperature. These advances improve the practicality of DNAzymes for ligation-based applications and broaden their potential use in DNA data storage.

Indexed as

DNADNA, CatalyticDNA LigasesImidazolesDNADNA, CatalyticDNA LigasesImidazolesActivation chemistryDNA data storageDNA LigationDNAzymeIn vitro selection

Identifiers

PMID41351198
PMCPMC12887632

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.