Evidence map›Paper›PMID 41346276›Full record

ArticleJournal of chemical theory and computation2025

Development and Bayesian Uncertainty Quantification of Coarse-Grained Models of Metals Based on Embedded Atom Method Potentials.

Abhishek T Sose, Troy Gustke, Karteek K Bejagam, Fangxi Wang, Aditya Savara, Sanket A Deshmukh

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Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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5 · Who and what money

Authors and funding

6 authors.

Abhishek T SoseDepartment of Chemical Engineering, Virginia Tech, Blacksburg, Virginia 24060, United States.ORCID 0000-0002-0001-6999
Troy GustkeDepartment of Chemical Engineering, Virginia Tech, Blacksburg, Virginia 24060, United States.
Karteek K BejagamDepartment of Chemical Engineering, Virginia Tech, Blacksburg, Virginia 24060, United States.ORCID 0000-0002-8660-9946
Fangxi WangDepartment of Chemical Engineering, Virginia Tech, Blacksburg, Virginia 24060, United States.
Aditya SavaraOak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States.ORCID 0000-0002-1937-2571
Sanket A DeshmukhDepartment of Chemical Engineering, Virginia Tech, Blacksburg, Virginia 24060, United States.ORCID 0000-0001-7573-0057

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coarse-grained (CG) molecular dynamics (MD) simulations have emerged as a powerful and cost-effective approach for modeling materials by simplifying atomic structures into CG beads. However, accurately parametrizing interatomic potential models (force fields, FFs) that can reliably reproduce material properties and quantifying the uncertainties associated with both the model parameters and their predictions remains a major challenge. In this study, we developed coarse-grained embedded atom method (CG EAM) potentials to model interatomic interactions in face-centered cubic (FCC) metals, including palladium (Pd), gold (Au), silver (Ag), copper (Cu), and platinum (Pt). The CG EAM potentials combine the physical interpretability of a traditional EAM with the computational efficiency of coarse-graining. We first employed a Particle Swarm Optimization (PSO) framework integrated with CG MD simulations to explore a 14-dimensional parameter space and identify CG EAM parameters that reproduce key physical, mechanical, and thermodynamic properties, such as cohesive energy, lattice constants, and elastic moduli. These parameters were subsequently refined using a Bayesian uncertainty quantification (BUQ) approach, which allowed the systematic assessment of uncertainties in both the FF parameters and the predicted properties. For all five metals, this framework yielded robust parameter ranges within which the predicted properties generally remained within their 95% confidence intervals. Overall, this integrated parameter optimization and BUQ approach provides an effective strategy for developing accurate and reliable interatomic potentials while offering a generalizable framework for designing both hard and soft materials with targeted properties.

Identifiers

PMID41346276
PMCPMC12746438

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.