Evidence map›Paper›PMID 41345555›Full record

ArticleBMC plant biology2025

Chromosome-scale assemblies of flowering dogwood cultivars enable identification of candidate genes regulating anthocyanin biosynthesis in leaves and bracts.

Trinity P Hamm, Sarah L Boggess, Marcin Nowicki, Denita Hadziabdic, DeWayne Shoemaker, Robert N Trigiano, William E Klingeman, Thomas J Molnar, Jim Leebens-Mack, Alex Harkess and 5 more

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Trinity P HammDepartment of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, US.ORCID http://orcid.org/0000-0001-7572-0967
Sarah L BoggessDepartment of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, US.ORCID http://orcid.org/0000-0003-1817-9400
Marcin NowickiDepartment of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, US.ORCID http://orcid.org/0000-0002-2655-5464
Denita HadziabdicDepartment of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, US.ORCID http://orcid.org/0000-0003-1991-2563
DeWayne ShoemakerDepartment of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, US.ORCID http://orcid.org/0000-0003-3659-8393
Robert N TrigianoDepartment of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, US.ORCID http://orcid.org/0000-0002-7264-1822
William E KlingemanDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, US.ORCID http://orcid.org/0000-0001-6272-0079
Thomas J MolnarDepartment of Plant Biology, Rutgers University, New Brunswick, NJ, US.ORCID http://orcid.org/0000-0001-6099-4244
Jim Leebens-MackDepartment of Plant Biology and The Plant Center, University of Georgia, Athens, GA, US.ORCID http://orcid.org/0000-0003-4811-2231
Alex HarkessHudsonAlpha Institute for Biotechnology, Huntsville, AL, US.ORCID http://orcid.org/0000-0002-2035-0871
Sheron A SimpsonGenomics and Bioinformatics Research Unit, United States Department of Agriculture - Agriculture Research Service (USDA-ARS), Stoneville, MS, US.ORCID http://orcid.org/0000-0003-0288-3452
Ramey C YoungbloodInstitute for Genomics, Biocomputing, and Biotechnology, Mississippi State University, Starkville, MS, US.ORCID http://orcid.org/0000-0001-9728-5214
Amanda M Hulse-KempGenomics and Bioinformatics Research Unit, USDA-ARS, Raleigh, NC, US.ORCID http://orcid.org/0000-0001-9670-9433
Brian E SchefflerGenomics and Bioinformatics Research Unit, United States Department of Agriculture - Agriculture Research Service (USDA-ARS), Stoneville, MS, US.ORCID http://orcid.org/0000-0003-1968-8952
Margaret E StatonDepartment of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, US. mstaton1@utk.edu.ORCID http://orcid.org/0000-0003-2971-9353

Funding

NSF Plant Genome Research Program 1444567United States Department of Agriculture - Agricultural Research Service (USDA-ARS) NACA 58-6062-6USDA-ARS Cris Project No. 6066-21310-006-00D
6 · The paper itself

Abstract

backgroundThe North American-native ornamental tree, flowering dogwood (Cornus florida L.), has a showy bract display that can range in color from white to pink to deep red. Although many trees have white bracts, there is consumer demand for novel pigmentation in the bracts combined with other traits of interest. Because the genetic basis of all traits in flowering dogwood is unknown, combining them using traditional breeding efforts is time, labor, and space-intensive.

resultsWe developed foundational genomic resources to establish marker-assisted selection within flowering dogwood breeding. We generated diploid, chromosome-scale, annotated genome assemblies for one pink-bracted and red-leafed tree and one white-bracted and green-leafed tree. Additionally, a phenotyping protocol for bract color and presence/absence diagnostic SNPs for bract and leaf color were established. We leveraged these resources to evaluate linkage associations and differential gene expression related to anthocyanin biosynthesis to identify candidate genes regulating bract and leaf pigmentation. Within a 14 Mb locus we identified 14 anthocyanin-related genes. Two genes, with MYB (g19533) and RING finger (g19556) binding domains, had both differential gene expression and variants with the expected segregation pattern.

conclusionsThese candidate genes, diagnostic SNPs, and genomic resources will be valuable in combining pink-red bracts with other traits to advance flowering dogwood breeding.

Indexed as

AnthocyaninsChromosomes, PlantGenes, PlantPlant LeavesFlowersPhenotypePigmentationPolymorphism, Single NucleotideAnthocyaninsBract colorCornus floridaDifferential gene expressionGenome assemblyMYB transcription factorQuantitative trait loci

Identifiers

PMID41345555
PMCPMC12797388

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.