Evidence map›Paper›PMID 41345123›Full record

ArticleScientific data2025

A high-resolution diel survey of surface ocean metagenomes, metatranscriptomes, and transfer RNA transcripts.

Sarah J Tucker, Jessika Füssel, Kelle C Freel, Evan Kiefl, Evan B Freel, Oscar Ramfelt, Clarisse E S Sullivan, Andrian P Gajigan, Hanako Mochimaru, Mariana Rocha de Souza and 13 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Sarah J Tucker *Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, 02543, USA.ORCID 0000-0003-0541-0853
Jessika Füssel *Marine Geochemistry, Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl von Ossietzky University, Oldenburg, 26129, Germany.
Kelle C Freel *Hawai'i Institute of Marine Biology, School of Ocean and Earth Science and Technology, University of Hawai'i at Mānoa, Kāne'ohe, HI, 96744, USA.
Evan KieflDepartment of Medicine, The University of Chicago, Chicago, IL, 60637, USA.
Evan B FreelHawai'i Institute of Marine Biology, School of Ocean and Earth Science and Technology, University of Hawai'i at Mānoa, Kāne'ohe, HI, 96744, USA.
Oscar RamfeltHawai'i Institute of Marine Biology, School of Ocean and Earth Science and Technology, University of Hawai'i at Mānoa, Kāne'ohe, HI, 96744, USA.
Clarisse E S SullivanUniversity of Hawai'i Foundation, Honolulu, HI, 96822, USA.
Andrian P GajiganDepartment of Oceanography, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA.
Hanako MochimaruHawai'i Institute of Marine Biology, School of Ocean and Earth Science and Technology, University of Hawai'i at Mānoa, Kāne'ohe, HI, 96744, USA.
Mariana Rocha de SouzaHawai'i Institute of Marine Biology, School of Ocean and Earth Science and Technology, University of Hawai'i at Mānoa, Kāne'ohe, HI, 96744, USA.
Mariko QuinnHawai'i Institute of Marine Biology, School of Ocean and Earth Science and Technology, University of Hawai'i at Mānoa, Kāne'ohe, HI, 96744, USA.
Ciara RatumHawai'i Pacific University, Kāne'ohe, HI, 96744, USA.
Leon L TranHawai'i Institute of Marine Biology, School of Ocean and Earth Science and Technology, University of Hawai'i at Mānoa, Kāne'ohe, HI, 96744, USA.
Marek SobczykDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, 60637, USA.
Samuel E MillerJosephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, 02543, USA.
Florian TrigodetHelmholtz Institute for Functional Marine Biodiversity, 26129, Oldenburg, Germany.
Karen LolansDepartment of Medicine, The University of Chicago, Chicago, IL, 60637, USA.
Hilary G MorrisonJosephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, 02543, USA.
Bailey FallonJosephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, 02543, USA.
Bruno HuettelMax Planck Genome-centre Cologne, Max Planck Institute for Plant Breeding Research, Carl-von-Linne-Weg 10, 50829, Cologne, Germany.ORCID 0000-0001-7165-1714
Tao PanDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, 60637, USA.
Michael S RappéHawai'i Institute of Marine Biology, School of Ocean and Earth Science and Technology, University of Hawai'i at Mānoa, Kāne'ohe, HI, 96744, USA. rappe@hawaii.edu.ORCID 0000-0002-9829-251X
A Murat ErenJosephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, 02543, USA. meren@hifmb.de.

Funding

NSF | GEO | Division of Ocean Sciences (OCE) 2019589Simons Foundation 687269Simons Foundation 989028
6 · The paper itself

Abstract

The roles of marine microbes in ecosystem processes are inherently linked to their ability to sense, respond, and ultimately adapt to environmental change. Capturing the nuances of this perpetual dialogue and its long-term implications requires insight into the subtle drivers of microbial responses to environmental change that are most accessible at the shortest scales of time. Here, we present a multi-omics dataset comprising surface ocean metagenomes, metatranscriptomes, tRNA transcripts, and biogeochemical measurements, collected every 1.5 hours for 48 hours at two stations within coastal and adjacent offshore waters of the tropical Pacific Ocean. We expect that this integrated dataset of multiple sequence types and environmental parameters will facilitate novel insights into microbial ecology, microbial physiology, and ocean biogeochemistry and help investigate the different mechanisms of adaptation that drive microbial responses to environmental change.

Indexed as

MetagenomeRNA, TransferSeawaterTranscriptomeDatasets as TopicEcosystemMicrobiotaPacific OceanRNA, Transfer

Identifiers

PMID41345123
PMCPMC12678497

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.