Evidence map›Paper›PMID 41343465›Full record

ArticlePloS one2025

Decoding the distinct immune landscape and possible regulatory mechanisms of autoimmune hepatitis through integrated single-cell and bulk RNA sequencing.

Gang Chi, Yijia Che, Jinhong Pei, Xueqing Li, Junmei Wang

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Evolving role of CD8Frontiers in immunology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Gang ChiDepartment of Biochemistry, Changzhi Medical College, Changzhi, Shanxi, China.ORCID https://orcid.org/0000-0002-8751-3380
Yijia CheDepartment of Biochemistry, Changzhi Medical College, Changzhi, Shanxi, China.
Jinhong PeiDepartment of Biochemistry, Changzhi Medical College, Changzhi, Shanxi, China.
Xueqing LiDepartment of Biochemistry, Changzhi Medical College, Changzhi, Shanxi, China.
Junmei WangDepartment of Biochemistry, Changzhi Medical College, Changzhi, Shanxi, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesAutoimmune hepatitis (AIH) is a complex immune-mediated liver disorder characterized by dysregulated immune responses. This study aimed to decode the distinct immune landscape and regulatory mechanisms of AIH using integrated single-cell and bulk RNA sequencing.

methodsThe data of single-cell RNA-seq (scRNA-seq) and bulk RNA-seq were downloaded from GEO database. The cell clustering, differential gene expression, trajectory analysis, functional enrichment, and cell-cell communication were performed were analyzed using R software.

resultsFive major immune cell types were identified, with CD8 + T cells and NK cells significantly expanded in AIH. Functional enrichment showed upregulation of immune activation, inflammation, and metabolic pathways in these cells. The cell-cell communication analysis revealed robust interactions between CD8 + T and NK cells, primarily driven by the CCL5-CCR signaling axis. Integrative analysis of scRNA-seq and bulk RNA-seq identified four common DEIRGs (ITK, IL7R, CXCR4 and SORT1) and one transcription factor PRDM1.

conclusionThis study identified dysregulated immune cell clusters, signaling pathways, and potential therapeutic targets in AIH.

Indexed as

Hepatitis, AutoimmuneSingle-Cell AnalysisCD8-Positive T-LymphocytesCell CommunicationGene Expression ProfilingHumansKiller Cells, NaturalRNA-SeqSequence Analysis, RNASignal Transduction

Identifiers

PMID41343465
PMCPMC12677505

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.