Evidence map›Paper›PMID 41341465›Full record

ReviewFrontiers in digital health2025

Technical and legal aspects of federated learning in bioinformatics: applications, challenges and opportunities.

Daniele Malpetti, Marco Scutari, Francesco Gualdi, Jessica van Setten, Sander van der Laan, Saskia Haitjema, Aaron Mark Lee, Isabelle Hering, Francesca Mangili

Abstract readReview
In one paragraph

Review in Frontiers in digital health, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Daniele MalpettiIstituto Dalle Molle di Studi sull'Intelligenza Artificiale (IDSIA), USI-SUPSI, Polo Universitario Lugano, Lugano, Switzerland.
Marco ScutariIstituto Dalle Molle di Studi sull'Intelligenza Artificiale (IDSIA), USI-SUPSI, Polo Universitario Lugano, Lugano, Switzerland.
Francesco GualdiIstituto Dalle Molle di Studi sull'Intelligenza Artificiale (IDSIA), USI-SUPSI, Polo Universitario Lugano, Lugano, Switzerland.
Jessica van SettenDepartment of Cardiology, University Medical Center Utrecht, University of Utrecht, Utrecht, Netherlands.
Sander van der LaanCentral Diagnostics Laboratory, University Medical Center Utrecht, University of Utrecht, Utrecht, Netherlands.
Saskia HaitjemaCentral Diagnostics Laboratory, University Medical Center Utrecht, University of Utrecht, Utrecht, Netherlands.
Aaron Mark LeeWilliam Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, London, United Kingdom.
Isabelle HeringÉtude Hering, DPO Associates SARL, Nyon, Switzerland.
Francesca MangiliIstituto Dalle Molle di Studi sull'Intelligenza Artificiale (IDSIA), USI-SUPSI, Polo Universitario Lugano, Lugano, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Federated learning leverages data across institutions to improve clinical discovery while complying with data-sharing restrictions and protecting patient privacy. This paper provides a gentle introduction to this approach in bioinformatics, and is the first to review key applications in proteomics, genome-wide association studies (GWAS), single-cell and multi-omics studies in their legal as well as methodological and infrastructural challenges. As the evolution of biobanks in genetics and systems biology has proved, accessing more extensive and varied data pools leads to a faster and more robust exploration and translation of results. More widespread use of federated learning may have a similar impact in bioinformatics, allowing academic and clinical institutions to access many combinations of genotypic, phenotypic and environmental information that are undercovered or not included in existing biobanks.

Indexed as

collaborative genomicsdata privacyexposomefederated machine learningsecure distributed analysis

Identifiers

PMID41341465
PMCPMC12669188

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.