Evidence map›Paper›PMID 41339703›Full record

ArticleNature genetics2025

ADAR1 editing is necessary for only a small subset of cytosolic dsRNAs to evade MDA5-mediated autoimmunity.

Tao Sun, Qin Li, Jonathan M Geisinger, Shi-Bin Hu, Boming Fan, Shichen Su, Waitang Tsui, Hongchao Guo, Jinbiao Ma, Jin Billy Li

Abstract read
In one paragraph

Article in Nature genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Tao Sun *Department of Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-2800-0921
Qin Li *Department of Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-8948-2717
Jonathan M GeisingerDepartment of Genetics, Stanford University, Stanford, CA, USA.
Shi-Bin HuDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-3326-7890
Boming FanState Key Laboratory of Genetics and Development of Complex Phenotypes, Department of Biochemistry and Biophysics, School of Life Sciences, Fudan University, Shanghai, China.
Shichen SuState Key Laboratory of Genetics and Development of Complex Phenotypes, Department of Biochemistry and Biophysics, School of Life Sciences, Fudan University, Shanghai, China.
Waitang TsuiState Key Laboratory of Genetics and Development of Complex Phenotypes, Department of Biochemistry and Biophysics, School of Life Sciences, Fudan University, Shanghai, China.
Hongchao GuoCardiovascular Institute, Stanford University, Stanford, CA, USA.
Jinbiao MaState Key Laboratory of Genetics and Development of Complex Phenotypes, Department of Biochemistry and Biophysics, School of Life Sciences, Fudan University, Shanghai, China.
Jin Billy LiDepartment of Genetics, Stanford University, Stanford, CA, USA. jin.billy.li@stanford.edu.ORCID http://orcid.org/0000-0003-0713-1399

Funding

Regulatory and Mechanistic Understanding of ADAR-Mediated RNA EditingR35GM144100 · NIGMS · STANFORD UNIVERSITY · PI Jin Billy Li · 2022 to 2026
$3.2M
Profiling and Dissecting the Dynamic Regulation of RNA EditingR01GM102484 · NIGMS · STANFORD UNIVERSITY · PI LI, JIN BILLY · 2013 to 2021
$3.1M
Systematic characterization of trans regulation of A-to-I RNA editing in neuronsR01MH115080 · NIMH · STANFORD UNIVERSITY · PI LI, JIN BILLY · 2017 to 2021
$2.3M
Systematic identification and characterization of immunogenic double-stranded RNAsR01AI182437 · NIAID · STANFORD UNIVERSITY · PI Jin Billy Li · 2024 to 2026
$2.1M
Beta cell death in early type 1 diabetes caused by innate immune response to inefficient RNA editingU01DK143477 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI KAESTNER, KLAUS H · 2025 to 2025
$1.8M
Systematic approaches to deciphering cis regulation of A-to-I RNA editingR01GM124215 · NIGMS · STANFORD UNIVERSITY · PI LI, JIN BILLY · 2017 to 2020
$1.7M
Impaired cellular RNA editing as a cause of inflammation in inflammatory bowel diseaseR01DK140912 · NIDDK · STANFORD UNIVERSITY · PI CALVIN J KUO, Jin Billy Li · 2024 to 2026
$1.3M
Division of Intramural Research, National Institute of Allergy and Infectious Diseases (Division of Intramural Research of the NIAID) R01AI182437NIAID NIH HHS R01 AI182437NIDDK NIH HHS R01 DK140912NIDDK NIH HHS U01 DK143477NIGMS NIH HHS R01 GM102484NIGMS NIH HHS R01 GM124215NIGMS NIH HHS R35 GM144100NIMH NIH HHS R01 MH115080U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) R01DK140912U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) U01DK143477U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM144100U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) R01MH115080
6 · The paper itself

Abstract

Endogenous long double-stranded RNAs (dsRNAs), which are not edited by the RNA editing enzyme ADAR1, may activate the antiviral dsRNA receptor MDA5 to trigger interferon-mediated immune responses. Among the large number of endogenous long dsRNAs, the key substrates that activate MDA5-termed as immunogenic dsRNAs-remain largely unidentified. Here we reveal that human immunogenic dsRNAs constitute a surprisingly small fraction of all cellular dsRNAs. We found that these immunogenic dsRNAs were highly enriched in mRNAs and depleted of introns, consistent with their role as cytosolic MDA5 substrates. We validated the MDA5-dependent immunogenicity of these dsRNAs, which was dampened following ADAR1-mediated RNA editing. Notably, immunogenic dsRNAs were enriched at genetic susceptibility loci associated with common inflammatory diseases, implying their functional importance. We anticipate that a focused analysis of immunogenic dsRNAs will enhance our understanding and treatment of cancer and inflammatory diseases, where the roles of dsRNA editing and sensing are increasingly recognized.

Indexed as

Adenosine DeaminaseAutoimmunityInterferon-Induced Helicase, IFIH1RNA-Binding ProteinsRNA, Double-StrandedRNA EditingCytosolHEK293 CellsHumansADAR protein, humanAdenosine DeaminaseIFIH1 protein, humanInterferon-Induced Helicase, IFIH1RNA-Binding ProteinsRNA, Double-Stranded

Identifiers

PMID41339703
PMCPMC12695637

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.