Evidence map›Paper›PMID 41339547›Full record

ArticleNature2026

Computational design of metallohydrolases.

Donghyo Kim, Seth M Woodbury, Woody Ahern, Doug Tischer, Alex Kang, Emily Joyce, Asim K Bera, Nikita Hanikel, Saman Salike, Rohith Krishna and 6 more

Abstract read
In one paragraph

Article in Nature, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Design-Evolution Synergy Enables New-to-Nature Enzyme Chemistry.bioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. High-throughput physics-based enzyme engineering.bioRxiv : the preprint server for biology · 2026
    Article
  5. Cascade Catalysis for COACS central science · 2026
    Review
  6. Article
  7. Article
  8. Zero-shot design of abioRxiv : the preprint server for biology · 2026
    Article
  9. Review
  10. Article
  11. Protein engineering: status report.Protein engineering, design & selection : PEDS · 2026
    Review
  12. Article
  13. Article
  14. bioRxiv : the preprint server for biology · 2025
    Article
  15. Review
  16. De Novo Design of High-Performance Cortisol Luminescent Biosensors.Journal of the American Chemical Society · 2025
    Article
  17. Computational design of serine hydrolases.Science (New York, N.Y.) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Donghyo Kim *Department of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-8097-3675
Seth M Woodbury *Department of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-0510-8240
Woody Ahern *Department of Biochemistry, University of Washington, Seattle, WA, USA.
Doug TischerDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Alex KangDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-5487-0499
Emily JoyceDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Asim K BeraDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-9473-2912
Nikita HanikelDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Saman SalikeDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Rohith KrishnaDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0009-0003-6387-9622
Jason YimMassachusetts Institute of Technology, Cambridge, MA, USA.ORCID http://orcid.org/0000-0003-0575-7400
Samuel J PellockDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-7557-7985
Anna LaukoDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Indrek KalvetDepartment of Biochemistry, University of Washington, Seattle, WA, USA. ikalvet@uw.edu.ORCID http://orcid.org/0000-0002-6610-2857
Donald HilvertLaboratory of Organic Chemistry, ETH Zurich, Zurich, Switzerland. hilvert@ethz.ch.ORCID http://orcid.org/0000-0002-3941-621X
David BakerDepartment of Biochemistry, University of Washington, Seattle, WA, USA. dabaker@uw.edu.ORCID http://orcid.org/0000-0001-7896-6217

Funding

Gates Foundation INV-010680
6 · The paper itself

Abstract

De novo enzyme design seeks to build proteins containing ideal active sites with catalytic residues surrounding and stabilizing the transition state(s) of the target chemical reaction

Indexed as

HydrolasesProtein EngineeringArtificial IntelligenceBiocatalysisCatalysisCatalytic DomainKineticsModels, MolecularZincHydrolasesZinc

Identifiers

PMID41339547
PMCPMC12727532

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.