Evidence map›Paper›PMID 41335247›Full record

ArticleJournal of molecular modeling2025

Benchmarking CuₙO (n = 1, 2) complexes via ab initio methods: structural, electronic, and thermodynamic insights with biochemical relevance.

Raúl Flores, Luis Soriano-Agueda, Marco Franco-Pérez, Rodolfo Gómez-Balderas

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Article in Journal of molecular modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Raúl Flores *Laboratorio de Fisicoquímica Analítica, Facultad de Estudios Superiores Cuautitlán, Unidad de Investigación Multidisciplinaria, Universidad Nacional Autónoma de México, C.P. 54700, Cuautitlán Izcalli, Estado de México, Mexico.
Luis Soriano-Agueda *Departamento de Física y Química Teórica, Facultad de Química, Universidad Nacional Autónoma de México, Cd. Universitaria, 04510, Ciudad de Mexico, Mexico.
Marco Franco-PérezDepartamento de Física y Química Teórica, Facultad de Química, Universidad Nacional Autónoma de México, Cd. Universitaria, 04510, Ciudad de Mexico, Mexico. qimfranco@quimica.unam.mx.
Rodolfo Gómez-BalderasLaboratorio de Fisicoquímica Analítica, Facultad de Estudios Superiores Cuautitlán, Unidad de Investigación Multidisciplinaria, Universidad Nacional Autónoma de México, C.P. 54700, Cuautitlán Izcalli, Estado de México, Mexico. rodolfo.gomez@unam.mx.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

contextCopper is an essential trace element that plays a central role in redox chemistry and electron transfer processes in biological systems. To gain a deeper understanding of the electronic behavior of copper species, we carried out a comparative evaluation of the Cu

methodsThis study employed density functional theory (DFT) alongside thermodynamic cycles to assess the stability of Cu(Indo)₂ and Cu₂(Indo)₄ complexes in ethanol solution. To select suitable computational methods, a benchmark was conducted using Cu(II)/acetate complexes as reference systems. A total of fifteen DFT functionals-BPW91, PBE, B97D, revTPSS, M06-L, M11-L, B3LYP, BHandHLYP, PBE0, ωB97XD, APDF, M06, M06-2X, M06-HF, and TPSSh-were tested in combination with four basis sets: Def2-SVP, Def2-TZVP, 6-31 + G(d,p), and 6-311 + G(d,p). The most reliable functional-basis set combinations were then applied to the copper-indomethacin complexes. In addition, electronic and structural properties of Cu₂ and CuO-such as ionization potentials, electron affinities, vibrational frequencies, equilibrium bond lengths, and spin or magnetic coupling constants-were calculated. Computational results were validated through comparison with available experimental data.

Indexed as

Cu(II)/acetateCu(II)/indomethacinMicro-solvationTheoretical protocol benchmarkingThermodynamic cycle

Identifiers

PMID41335247
PMCPMC12675678

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